Showing : PACKAGES • reset
1
vote
11
replies
2.1k
views
Bioconductor Software Packages raw (not html) detail view?
packages details
9.2 years ago • updated 8.9 years ago smoretti ▴ 10
2
votes
7
replies
1.3k
views
Is there a way to find corresponding svn revision for the current /devel/src/contrib/PACKAGES and /release?
svn PACKAGES
updated 9.2 years ago by ★ 8.2k • written 9.2 years ago by • 0
4
votes
7
replies
15k
views
package ‘edgeR’ is not available (for R version 3.1.2)
edgeR packages
9.3 years ago Patrick Schorderet ▴ 20
1
vote
6
replies
2.2k
views
Bioconductor installation problems
packages installation Bioconductor updating
updated 2.2 years ago by 700 • written 2.2 years ago by ▴ 10
3
votes
6
replies
2.2k
views
List of package names with versions
packages
updated 8.2 years ago by • 0 • written 8.2 years ago by • 0
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager valid update packages
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
12
votes
5
replies
1.9k
views
News: DOI for packages
DOI doi packages citation publication News
6.6 years ago shepherl 3.9k
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R installation packages annotatr biocmanager
4.1 years ago dakarai_esgdaille ▴ 10
2
votes
4
replies
2.4k
views
Package RnBeads not available for R 3.1.2?
RnBeads packages R 3.1.2
8.8 years ago bmreilly • 0
0
votes
4
replies
1.5k
views
Newbee question: how to output/write data (measureents) to a text file?
packages
8.4 years ago Reinert Korsnes • 0
0
votes
4
replies
2.2k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install packages Mus.musculus
updated 3.9 years ago by ★ 3.9k • written 3.9 years ago by • 0
1
vote
4
replies
1.5k
views
Merging two files based on the identifier column (gene symbols)?
merge files R packages gene annotations
4.7 years ago mohammedtoufiq91 ▴ 10
0
votes
3
replies
1.3k
views
Cant update old packages
software error packages update
updated 3.8 years ago by 65k • written 3.8 years ago by • 0
3
votes
3
replies
1.3k
views
Incomplete Install of Bioconductor Packages
Installation Packages Missing
updated 3.8 years ago by 1.6k • written 4.0 years ago by ▴ 10
3
votes
3
replies
1.5k
views
Question regarding best bioconductor package for RNA-seq
rna-seq packages
updated 7.2 years ago by ▴ 360 • written 7.2 years ago by ▴ 10
0
votes
2
replies
1.3k
views
News: Single Package Builder / New Package Submission
new submission build report packages News
6.5 years ago shepherl 3.9k
1
vote
2
replies
2.4k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
6.4 years ago inzirio ▴ 10
2
votes
2
replies
1.3k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment packages granges iranges
updated 6.4 years ago by ★ 28k • written 6.4 years ago by ▴ 60
0
votes
2
replies
2.0k
views
Issues installing packages miniconda environment
bioclite deseq2 miniconda packages
6.2 years ago cpat • 0
2
votes
2
replies
1.0k
views
News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
4.5 years ago shepherl 3.9k
0
votes
2
replies
1.3k
views
Unable to install package
packages installation GenomeGraphs
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
0
votes
2
replies
1.1k
views
cannot install various functions in R
GRanges packages installation
updated 2.0 years ago by 3.9k • written 2.0 years ago by • 0
0
votes
2
replies
600
views
Bioconductor API or dataset
Bioconductor Packages Dataset API
updated 15 months ago by 700 • written 15 months ago by • 0
0
votes
1
reply
1.1k
views
Couldnt find getAE and ae2bioc?
getAE ae2bioc bioconductor packages library
updated 4.7 years ago by ★ 6.5k • written 4.7 years ago by • 0
5
votes
1
reply
464
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.9k
1
vote
1
reply
993
views
News: DEADLINE: commits to Bioc 3.7
release bioconductor packages package updates News
6.1 years ago shepherl 3.9k
0
votes
1
reply
1.1k
views
News: Single Package Builder Updates and Testing
packages review spb News
6.4 years ago shepherl 3.9k
1
vote
1
reply
870
views
Error when installing edgeR and DESeq package
software error packages
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
2
votes
1
reply
2.7k
views
Installation of bioConductor packages
installation packages bioconductor all
updated 8.5 years ago by 25k • written 8.5 years ago by • 0
0
votes
1
reply
669
views
Notification for package release?
packages
updated 3.0 years ago by ▴ 730 • written 3.0 years ago by ▴ 10
0
votes
1
reply
1.2k
views
trouble installing DESeq2
install packages R DESeq2
updated 2.0 years ago by 3.9k • written 2.0 years ago by • 0
0
votes
1
reply
1.9k
views
Installation of r2excel package
github packages
updated 5.3 years ago by 50k • written 5.3 years ago by ▴ 10
0
votes
1
reply
1.8k
views
R: oligo packages install error
oligo packages error
updated 4.9 years ago by 25k • written 4.9 years ago by • 0
0
votes
1
reply
4.7k
views
monocle error at orderCells
scRNA monocle packages Tutorial
4.7 years ago 444579004 • 0
2
votes
1
reply
1.0k
views
Large Size of R packages containing S4 classes
S4 packages
updated 5.7 years ago by ★ 11k • written 5.7 years ago by ▴ 10
4
votes
0
replies
954
views
News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
3.6 years ago shepherl 3.9k
4
votes
0
replies
142
views
News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
17 days ago shepherl 3.9k
4
votes
0
replies
667
views
News: Bioconductor Release 3.16 Schedule
Release Devel packages release devel
20 months ago shepherl 3.9k
1
vote
0
replies
864
views
News: Bioconductor Release 3.14 Schedule
devel Devel release packages Release
2.7 years ago shepherl 3.9k
0
votes
0
replies
1.6k
views
what R package prediction secondary structure for amino acids
packages
9.1 years ago m016648 • 0
0
votes
0
replies
820
views
News: knitr ERROR on Biocondcutor builders
Devel Bioconductor Packages BuildReport devel
2.8 years ago shepherl 3.9k
6
votes
0
replies
867
views
News: Bioconductor 3.10 is released!!
release software packages bioconductor News
4.6 years ago shepherl 3.9k
0
votes
0
replies
610
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
12 months ago shepherl 3.9k
1
vote
0
replies
809
views
News: Bioconductor 3.16 is Released!
Release Packages Bioconductor Software
18 months ago shepherl 3.9k
1
vote
0
replies
785
views
News: Bioconductor Release 3.11 Schedule Posted
release deadlines builds packages News
4.2 years ago shepherl 3.9k
8
votes
0
replies
906
views
News: Bioconductor 3.14 is Released!
release Packages Software Release Bioconductor
2.6 years ago • updated 2.5 years ago shepherl 3.9k
4
votes
0
replies
827
views
News: Bioconductor 3.11 is Released!
software bioconductor release packages News
4.1 years ago shepherl 3.9k
1
vote
0
replies
840
views
News: Bioconductor Release 3.15 Schedule
Devel release packages Release devel
2.2 years ago shepherl 3.9k
5
votes
0
replies
1.0k
views
News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
3.0 years ago shepherl 3.9k
0
votes
0
replies
1.5k
views
News: New Package Submission Deadline
Packages News
8.2 years ago Martin Morgan 25k
50 results • Page 1 of 1
Recent ...
Replies
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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