Showing : Pathview • reset
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operations are possible only for numeric, logical or complex types
hgu133plus2 pathview hgu133plus2 pathview
updated 11.1 years ago by ★ 1.6k • written 11.1 years ago by ★ 13k
44
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29
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13k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 3.7 years ago by ▴ 130 • written 3.8 years ago by ▴ 160
8
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13
replies
12k
views
Pathview: *** caught segfault *** cause 'memory not mapped'
pathview segfault
updated 8.5 years ago by ▴ 40 • written 9.1 years ago by ▴ 30
0
votes
14
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5.5k
views
Easy way to turn OrgDb object from AnnotationHub into package?
AnnotationHub AnnotationDbi AnnotationForge pathview
8.0 years ago • updated 2.4 years ago Jenny Drnevich ★ 2.0k
2
votes
3
replies
5.4k
views
Pathview None of the genes or compounds mapped to the pathway
pathview pathways KEGG empty map
updated 3.5 years ago by • 0 • written 9.1 years ago by ▴ 20
2
votes
11
replies
5.2k
views
Recent build and parsing error in pathview
pathview KEGGgraph gage pathway pathway analysis
7.5 years ago Luo Weijun ★ 1.6k
4
votes
6
replies
4.7k
views
Pathview unable to download pathways
clusterProfiler KEGGgraph clusterpr KEGG pathview
updated 2.4 years ago by ★ 4.1k • written 2.6 years ago by ▴ 10
0
votes
6
replies
4.3k
views
Error in using Pathview package. Do not print the pathways provided by GAGE analysis
gage pathview error
updated 8.6 years ago by ★ 1.6k • written 8.7 years ago by • 0
0
votes
2
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4.0k
views
Cannot open URL 'http://rest.kegg.jp/get/osaNA/kgml': HTTP status was '400 Bad Request'
gage gage package pathview rna-seq
updated 2.9 years ago by • 0 • written 6.9 years ago by • 0
0
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2
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3.9k
views
Mapping gene IDs to gene symbol of KEGG pathways with "Pathview"
Pathview KEGG annotation gene symbol visualization
updated 9.6 years ago by ★ 1.6k • written 9.6 years ago by ▴ 130
4
votes
3
replies
3.6k
views
only 0's may be mixed with negative subscripts
pathview
updated 22 months ago by ▴ 10 • written 8.1 years ago by ▴ 30
2
votes
6
replies
3.6k
views
Fixing download.kegg, from pathview(), which returns empty xml
pathview download.kegg() xml
updated 9.3 years ago by ★ 1.6k • written 9.4 years ago by • 0
0
votes
4
replies
3.5k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways graph PROcess SIM gage pathview Pathways graph PROcess SIM gage pathview
updated 11.4 years ago by ▴ 230 • written 11.4 years ago by ★ 1.6k
2
votes
2
replies
3.4k
views
Why Pathview shows just red color (up-regulated genes) on a pathway?
Pathview pathway analysis differential gene expression
updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by ▴ 20
1
vote
5
replies
3.4k
views
KEGG enrichment for non-model
kegg pathway analysis non-model gage pathview
updated 3.5 years ago by • 0 • written 6.5 years ago by ▴ 40
0
votes
0
replies
3.4k
views
Pathview+GAGE workflow on RNA-seq data pathway analysis and visualization (was: Pathview published in Bioinformatics)
Annotation Pathways Visualization graph PROcess gage pathview Annotation Pathways graph
11.5 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
3.3k
views
DESeq2 with GAGE
Pathways cycle gage DESeq2 pathview Pathways cycle gage DESeq2 pathview
11.2 years ago Luo Weijun ★ 1.6k
3
votes
13
replies
3.2k
views
pathview says my nonmodel species is unknown: "species invalid"
KEGGREST KEGG gage pathview
2.4 years ago • updated 23 months ago nute11a ▴ 10
0
votes
2
replies
3.2k
views
pathview -- ID Problem?
graph pathview graph pathview
updated 11.2 years ago by ▴ 40 • written 11.2 years ago by ★ 1.6k
0
votes
5
replies
3.1k
views
Gene Symbol with Pathview
pathview bioconductor kegg visualization
updated 9.2 years ago by ★ 1.6k • written 9.3 years ago by • 0
1
vote
1
reply
3.1k
views
Pathview color code and gene homolog handling?
pathview
updated 8.3 years ago by ★ 1.6k • written 8.4 years ago by • 0
0
votes
4
replies
3.1k
views
pathview: Warning: Download of hsa04110 xml and png files failed!
pathview
6.5 years ago masamiwata • 0
0
votes
7
replies
2.9k
views
Error in pathview - came out of nowhere without any source code modification
pathview
updated 7.6 years ago by ★ 1.6k • written 7.7 years ago by • 0
0
votes
0
replies
2.9k
views
Pathview with non-KEGG organisms?
Microbiome Pathways GO Visualization Organism graph gage pathview Microbiome Pathways GO
11.5 years ago Luo Weijun ★ 1.6k
1
vote
2
replies
2.8k
views
Error in Pathview parsing: "Parsing ./ko00195.xml file failed, please check the file!"
pathview KEGG parsing
7.2 years ago ladypurrsia ▴ 10
0
votes
3
replies
2.7k
views
Pathview -- Error in korg[ridx, coln] : subscript out of bounds
pathview korg subscript out of bounds Tutorial
updated 7.3 years ago by ★ 1.6k • written 7.3 years ago by • 0
0
votes
1
reply
2.7k
views
Input file of NGS data for Pathview
rnaseq pathview data visualization
updated 9.2 years ago by ★ 1.6k • written 9.2 years ago by ▴ 10
3
votes
5
replies
2.6k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 9.2 years ago by ★ 1.6k • written 9.2 years ago by ▴ 840
0
votes
4
replies
2.6k
views
GAGE kegg.gsets function does not work: 'names' attribute [1] must be the same length as the vector [0]
gage pathview
9.3 years ago martin.hoelzer ▴ 20
0
votes
1
reply
2.6k
views
pathview -- ID Problem?
Annotation pathview Annotation pathview
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ★ 13k
0
votes
4
replies
2.6k
views
pathview error "negative length vectors are not allowed
pathview kegg KEGG
updated 3 months ago by • 0 • written 16 months ago by • 0
1
vote
2
replies
2.6k
views
Using GAGE to Analyze Pathway Enrichment Directly from Fold Change Data
GAGE Gene Ontology rna-seq pathview
updated 7.3 years ago by ★ 1.6k • written 7.3 years ago by • 0
1
vote
3
replies
2.5k
views
Pathview pathview kegg.native=TRUE throws error in img
pathview kegg error bioconductor rnaseq
updated 7.2 years ago by ▴ 40 • written 7.9 years ago by ▴ 30
0
votes
1
reply
2.4k
views
error when rendering pathway with pathview package
pathview
updated 7.7 years ago by ★ 1.6k • written 7.7 years ago by ▴ 10
4
votes
3
replies
2.4k
views
Pathview: Exporting non native KEGG pathway to PNG
pathview bioconductor graphics graphviz Pathview
updated 8.3 years ago by ▴ 10 • written 8.4 years ago by ▴ 30
0
votes
2
replies
2.4k
views
Drawing custom KEGG pathways
pathview KEGG
3.7 years ago • updated 3.6 years ago curiousmind007 ▴ 10
0
votes
4
replies
2.4k
views
Error: Pathway analysis using Sleuth results
pathview gage rna-seq R sleuth
8.0 years ago bioinf ▴ 10
4
votes
4
replies
2.3k
views
How I interpret this plot from pathview
pathview kegg r pathway
5.2 years ago • updated 5.1 years ago AZ ▴ 30
0
votes
0
replies
2.3k
views
Pathview with non-KEGG organisms?
Pathways Organism pathview Pathways Organism pathview
11.5 years ago Luo Weijun ★ 1.6k
1
vote
2
replies
2.3k
views
Please help with pathway analysis using Pathview
pathview pathway analysis
updated 8.6 years ago by ★ 1.6k • written 8.6 years ago by ▴ 20
0
votes
0
replies
2.3k
views
parsing discrete colors in pathview KEGG
SIM pathview SIM pathview
10.9 years ago Luo Weijun ★ 1.6k
0
votes
5
replies
2.3k
views
pathview puzzle
Pathways pathview Pathways pathview
11.4 years ago Oleg Moskvin ▴ 60
0
votes
0
replies
2.3k
views
Pathview question
Network convert pathview Network convert pathview
10.7 years ago Luo Weijun ★ 1.6k
0
votes
0
replies
2.3k
views
Pathview with minor species
Microarray Annotation GO Bacillus subtilis gage pathview Microarray Annotation GO gage
11.0 years ago Luo Weijun ★ 1.6k
0
votes
1
reply
2.3k
views
Pathview - Problem with PNG output
Pathways graph pathview Pathways graph pathview
updated 11.3 years ago by ★ 1.6k • written 11.3 years ago by ▴ 150
0
votes
3
replies
2.2k
views
pathview - plotting multiple samples in the same graph?
Pathways GO pathview Pathways GO pathview
10.9 years ago Peter Davidsen ▴ 210
0
votes
2
replies
2.2k
views
pathview: object 'bods' not found
pathview
updated 5.5 years ago by ▴ 10 • written 6.3 years ago by • 0
1
vote
1
reply
2.2k
views
Error with Pathview: Bad Request (HTTP 400)
KEGGREST pathview R
updated 21 months ago by ★ 4.1k • written 21 months ago by ▴ 10
0
votes
1
reply
2.2k
views
Pathview: visualization of data
pathview data visualization
updated 8.9 years ago by ★ 1.6k • written 8.9 years ago by ★ 4.1k
1
vote
1
reply
2.1k
views
Using pathview with uncommon species leads to Errors
pathview Kegg rnaseq data visualization
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by • 0
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