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3
votes
3
replies
13k
views
How to fix 'long vectors not supported yet' error in R
r
updated 7 weeks ago by
Amruta
• 0 • written 5.3 years ago by
r.tor
• 0
11
votes
10
replies
7.6k
views
biomaRt not working - lazy table error
error
lazy
R
biomaRt
table
updated 9 weeks ago by
juo5
• 0 • written 6 months ago by
Abhishek
▴ 20
0
votes
5
replies
9.3k
views
tximport all(file.exists(files)) is not TRUE
bioconductor
tximport
rnaseq
R
updated 9 weeks ago by
Eva
• 0 • written 7.7 years ago by
ctl
• 0
0
votes
10
replies
859
views
Unable to locate BioMart dataset for Dog10K_Boxer_Tasha
R
BioMart
biomaRt
6 months ago • updated 12 weeks ago
ScafioRuo
• 0
0
votes
0
replies
132
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R
ATACseqQC
12 weeks ago
danalvoronov
▴ 10
0
votes
4
replies
399
views
limma with interaction term
R
biostatistics
limma
Epigenetics
3 months ago • updated 12 weeks ago
Jitendra
▴ 10
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 3 months ago by
Gordon Smyth
50k • written 4.8 years ago by
sambunga094
• 0
1
vote
12
replies
2.5k
views
Is there a need or general principle/rule to assess whether the data types/distribution etc is suitable for limma R package to derive differential fe…
limma
highthroughputassays
R
updated 4 months ago by
Mary
• 0 • written 2.6 years ago by
Ming
▴ 380
0
votes
6
replies
8.7k
views
No gene can be mapped error with clusterprofiler
clusterprofiler
r
updated 4 months ago by
Guido Hooiveld
★ 4.0k • written 7.4 years ago by
prp291
• 0
0
votes
3
replies
528
views
Easiest way to convert read10xMolInfo data into a dataframe in R with gene labels as row names
tidyverse
R
SingleCellExperiment
SingleCellData
updated 5 months ago by
daenerystargaryen56
• 0 • written 5 months ago by
Sitapriya
• 0
1
vote
3
replies
1.9k
views
DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
DiffBind
R
chipseq
updated 5 months ago by
Rory Stark
★ 5.2k • written 6.6 years ago by
kyliecode
• 0
0
votes
3
replies
1.7k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
written 3.2 years ago by
tanya
• 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.3 years ago by
chandlerjd58
▴ 10
0
votes
0
replies
257
views
multipollutant models
statistics
Regression
r
limma
5 months ago
Jitendra
▴ 10
3
votes
4
replies
572
views
Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
6 months ago
pl23
• 0
1
vote
3
replies
1.4k
views
Error in the UcscTrack() in package "Gviz"
DMR
Methylation
R
Gviz
updated 6 months ago by
Robert Ivanek
▴ 730 • written 3.0 years ago by
ltzhou
• 0
22
votes
15
replies
7.6k
views
biomaRt error unable to fix: need help troubleshooting
biomaRt
RNASeqData
R
updated 6 months ago by
Marie
▴ 10 • written 2.1 years ago by
Dina
▴ 50
0
votes
2
replies
2.1k
views
Creating a qPCRset object from a text file
qPCRset object
nondetects
r
package
txt
updated 7 months ago by
Nat.Nataren
• 0 • written 6.4 years ago by
s.m.may
• 0
7
votes
5
replies
7.1k
views
biomaRt server error, and mirrors do not help
ensembl
biomaRt
R
updated 7 months ago by
Ke
• 0 • written 2.1 years ago by
kieran.short
▴ 40
4
votes
5
replies
2.0k
views
time course microarray data ArrayExpress database
R
GillespieColin
ArrayExpress
import
TimeSeriesExperiment
updated 7 months ago by
jacorvar
▴ 40 • written 19 months ago by
eraldagjika
▴ 20
4
votes
7
replies
14k
views
Confused about the CPM and TMM normalization in edgeR
RNASeq
R
edgeR
updated 8 months ago by
Gordon Smyth
50k • written 23 months ago by
Mohamed
▴ 30
0
votes
2
replies
590
views
DEXSeqDataSet object DEXSeqDataSetFromHTSeq Error: line number did not have 3 elements
DEXSeq
HTSeq
R
9 months ago • updated 8 months ago
yr542
• 0
1
vote
2
replies
652
views
biomaRt not retrieving complete list of functional consequences associated with list of SNPs
ensembl
R
biomaRt
10 months ago
Miguel
• 0
2
votes
5
replies
1.4k
views
Question about RNAseq analysis in EdgeR to identify common and donor specific differentially expressed genes
R
edgeR
RNASeq
10 months ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
537
views
Gene enrichment analysis
analysis
R
GOfuncR
updated 11 months ago by
Lluís Revilla Sancho
▴ 730 • written 11 months ago by
Eliza
• 0
3
votes
3
replies
4.8k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 11 months ago by
Guido Hooiveld
★ 4.0k • written 4.1 years ago by
t.b.kuipers
• 0
0
votes
2
replies
1.2k
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
updated 12 months ago by
hfbarrerat
• 0 • written 3.2 years ago by
Bethan
• 0
4
votes
8
replies
2.2k
views
Can we use rlog or vst data values in limma for differential expression analysis?
DESeq2
limma
Normalization
R
updated 12 months ago by
Gordon Smyth
50k • written 17 months ago by
Sabiha
▴ 20
28 results • Page
1 of 1
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Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
There is the `zlibbioc` package that provides the headers for zlib 1.2.5, that I think you should be able to use, although that would requi…
Answer: GSVA function
by
Robert Castelo
★ 3.3k
Hi, We recommend to input normalized expression values in logarithmic scale to GSVA. We also recommend to use the latest release of the …
Comment: Cannot install oligo on Fedora
by
Guido Hooiveld
★ 4.0k
Aha, that is a good one! Starting from release 40, as I just found out, Fedora apparently is not including/using `zlib` as such anymore, b…
Comment: Cannot install oligo on Fedora
by
James W. MacDonald
66k
What version of zlib are you running? I can compile with 1.2.7
Comment: SingleR Label.Ont
by
Anna
• 0
It makes me happy that I have finally found a trusted and safe online casino in Australia. I read a lot of different additional information…
Votes
Answer: How to run allelic imbalance in apeglm
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Answer: Documenting resources in an `ExperimentHub` package?
Answer: Not able to install any Bioconductor 3.18 package [unable to access index]
Seurat/DESeq2 - single cell RNA-seq differential expression
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