Bioconductor RNA-SEQ

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deseq2 rna-seq DEGs cooks cutoff

written 5.7 years ago by aishu.jp ▴ 30

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deseq2 vst rna-seq machine-learning

updated 5.1 years ago by Michael Love 42k • written 5.1 years ago by Manik Garg ▴ 20

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3

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rna-seq rnaseq r

updated 5.1 years ago by Gordon Smyth 51k • written 5.8 years ago by g.k • 0

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deseq2 rnaseq rna-seq

7.1 years ago nikmehr22 • 0

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limma voom limma voom rna-seq quantile normalization

updated 8.6 years ago by Gordon Smyth 51k • written 8.6 years ago by lassancejm ▴ 50

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deseq2 deseq rna-seq

9.7 years ago gavrielmatt ▴ 30

41

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44

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FDR p-value DESeq RNA-Seq

updated 6.7 years ago by Wade Davis ▴ 60 • written 7.3 years ago by yjiangnan ▴ 10

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14

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deseq rna-seq

9.5 years ago rodriguez.varenka • 0

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pvalue adjusted pvalue r bonferroni rna-seq

updated 7.9 years ago by Michael Love 42k • written 7.9 years ago by fromhj304 ▴ 10

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WGCNA RNA-Seq DESeq2 voom removebatcheffect()

updated 8.0 years ago by Peter Langfelder ★ 3.0k • written 8.0 years ago by gokce.ouz ▴ 70

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deseq2 rna-seq

8.1 years ago • updated 8.0 years ago anand_mt ▴ 90

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deseq2 edgeR rna-seq

updated 4 months ago by Elizabeth • 0 • written 9.2 years ago by gthm ▴ 30

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deseq2 R rna-seq design

updated 3.7 years ago by Michael Love 42k • written 4.8 years ago by raquelgarza95 • 0

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10

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gsva gene set variation analysis normalization transformation rna-seq

6.5 years ago • updated 5.6 years ago rached ▴ 60

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3

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deg rna-seq rpkm

updated 9.5 years ago by b.nota ▴ 370 • written 9.5 years ago by Yue Zhao • 0

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deseq2 scRNA-Seq RNA-Seq differential expression analysis

updated 5.5 years ago by Michael Love 42k • written 5.5 years ago by hamza_karakurt ▴ 60

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RNA-seq featureCounts total RNA

updated 23 months ago by snijesh ▴ 200 • written 6.3 years ago by inah ▴ 10

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deseq2 rna-seq normalization

8.4 years ago gil.hornung • 0

2

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rna-seq batch-effect combat scran sva

updated 7.0 years ago by Aaron Lun ★ 28k • written 7.0 years ago by rmf ▴ 20

4

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5

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featurecounts hisat2 rna-seq mapping

updated 8.3 years ago by Wei Shi ★ 3.6k • written 8.4 years ago by Koen Van den Berge ▴ 180

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deseq2 R rna-seq

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by aorvedahl • 0

8

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deseq2 LRT RNA-Seq

updated 9.4 years ago by Michael Love 42k • written 9.4 years ago by solgakar@bi.technion.ac.il ▴ 90

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rna-seq deseq2

updated 2.9 years ago by AZ ▴ 30 • written 6.9 years ago by gtho123 ▴ 40

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WGCNA RNA-seq ModuleMembership Network Hub gene

updated 2.3 years ago by annamariabugaj ▴ 10 • written 4.1 years ago by ag1805x ▴ 80

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11

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5.8k

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tximport Kallisto rna-seq

updated 7.5 years ago by pablo_garcia05 ▴ 20 • written 8.4 years ago by cguzman.bioinformatics ▴ 10

3

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7

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5.7k

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sva rna-seq

updated 6.4 years ago by Sandip Darji ▴ 30 • written 8.6 years ago by kmuench ▴ 40

8

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7

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limma duplicateCorrelation rna-seq technical replicates biological replicates

updated 4.9 years ago by Aaron Lun ★ 28k • written 4.9 years ago by paul.alto ▴ 50

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deseq2 RNA-Seq

updated 4.2 years ago by Michael Love 42k • written 4.2 years ago by Helena ▴ 10

3

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rna-seq deseq2 multiple time points

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by Maithê Barros ▴ 10

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deseq2 differential expression rna-seq

7.0 years ago David Requena ▴ 20

3

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12

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limma batch effect rna-seq

updated 6.0 years ago by Peter Langfelder ★ 3.0k • written 6.0 years ago by Mike A ▴ 10

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deseq2 rnaseq plotMA deseq rna-seq

updated 8.5 years ago by Michael Love 42k • written 8.5 years ago by sjs0282 • 0

10

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voom limma rna-seq differential gene expression

updated 8.1 years ago by Gordon Smyth 51k • written 8.1 years ago by rubi ▴ 110

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rna-seq edger glmlrt interactions

updated 8.4 years ago by Gordon Smyth 51k • written 8.4 years ago by David R ▴ 90

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WGCNA pickSoftThreshold power RNA-Seq

updated 8.6 years ago by Peter Langfelder ★ 3.0k • written 8.6 years ago by mrodrigues.fernanda ▴ 10

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3

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rnaseq rna-seq limma geoquery edger

updated 7.1 years ago by Sean Davis 21k • written 7.1 years ago by hkarakurt ▴ 20

1

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5

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4.4k

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WGCNA RNA-Seq

updated 7.9 years ago by Peter Langfelder ★ 3.0k • written 7.9 years ago by gokce.ouz ▴ 70

2

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1

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4.4k

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voom limma-voom voomwithqualityweights rna-seq

updated 6.6 years ago by Matthew Ritchie ▴ 1000 • written 6.6 years ago by anne.biton ▴ 20

6

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7

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rnaseq rna-seq linear model limma

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by Thomas Sandmann ▴ 90

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RUVSeq FPKM removeBatchEffect RNA-seq sva

updated 2.7 years ago by ATpoint ★ 4.4k • written 3.5 years ago by Xiaojie Cheng • 0

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rna-seq recount

updated 3.4 years ago by Leonardo Collado Torres ★ 1.1k • written 7.0 years ago by maleknias • 0

14

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9

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limma rna-seq removebatcheffect()

updated 6.6 years ago by alakatos ▴ 130 • written 8.4 years ago by Ekarl2 ▴ 80

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6

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4.0k

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edger rna-seq

updated 9.2 years ago by Gordon Smyth 51k • written 9.2 years ago by Nick N ▴ 60

18

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12

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4.0k

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edgeR deseq2 rna-seq independent filtering

updated 9.2 years ago by Michael Love 42k • written 9.2 years ago by Ryan C. Thompson ★ 7.9k

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2

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RNA-seq featureCounts ht-seq

written 4.1 years ago by ag1805x ▴ 80

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1

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WGCNA RNA-seq signedKME

updated 9.7 years ago by Peter Langfelder ★ 3.0k • written 9.7 years ago by vieuphoria ▴ 10

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2

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gage gage package pathview rna-seq

updated 2.5 years ago by Helen • 0 • written 6.6 years ago by tarun2 • 0

4

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6

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deseq2 normalization rna-seq TCGA vst

updated 5.5 years ago by Michael Love 42k • written 5.5 years ago by Marc Saric ▴ 70

5

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7

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deseq2 rna-seq design matrix deseq

updated 5.9 years ago by Michael Love 42k • written 5.9 years ago by thindmarsmission ▴ 10

2

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3

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3.7k

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deseq2 rna-seq differential expression analysis

5.6 years ago shreygandhi1990 ▴ 10