Showing : Software • reset
4
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0
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122
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News: Bioconductor 3.19 is Released!
Release Bioconductor Packages Software
13 days ago shepherl 3.9k
0
votes
7
replies
735
views
News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
10 weeks ago • updated 21 days ago shepherl 3.9k
0
votes
1
reply
290
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News: Bioconductor 3.19 Release Schedule
Release release Software
10 weeks ago • updated 7 weeks ago shepherl 3.9k
5
votes
1
reply
452
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 6 months ago by 3.9k
2
votes
1
reply
1.0k
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq microbiome Software
updated 7 months ago by ★ 4.1k • written 8 months ago by ▴ 10
0
votes
0
replies
439
views
News: Bioconductor 3.18 Release Schedule
Release Software release
8 months ago shepherl 3.9k
0
votes
1
reply
418
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Generate false reads for testing
mgu74bv2cdf Software Alignment
updated 11 months ago by 65k • written 11 months ago by • 0
1
vote
8
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1.5k
views
News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.1 years ago by 3.9k
0
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0
replies
601
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News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
12 months ago shepherl 3.9k
0
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0
replies
565
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News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
14 months ago shepherl 3.9k
3
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6
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1.2k
views
News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 13 months ago by • 0 • written 14 months ago by 3.9k
0
votes
0
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790
views
Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
17 months ago Robert Castelo ★ 3.3k
1
vote
0
replies
800
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News: Bioconductor 3.16 is Released!
Release Packages Bioconductor Software
18 months ago shepherl 3.9k
0
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0
replies
732
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release Devel Bioconductor Software
19 months ago shepherl 3.9k
8
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0
replies
873
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News: Bioconductor 3.15 is Released!
Software Release Packages Bioconductor
2.0 years ago shepherl 3.9k
0
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0
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627
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News: New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release Software Bioconductor Devel
2.1 years ago shepherl 3.9k
0
votes
5
replies
1.3k
views
News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
2.6 years ago • updated 2.1 years ago shepherl 3.9k
8
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0
replies
900
views
News: Bioconductor 3.14 is Released!
release Packages Software Release Bioconductor
2.5 years ago shepherl 3.9k
0
votes
0
replies
863
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Job: Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data immunology software vaccinology
2.7 years ago Daniel • 0
5
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0
replies
1.0k
views
News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
3.0 years ago shepherl 3.9k
2
votes
2
replies
1.5k
views
News: Final List of Deprecated Packages for Bioc3.13
Workflow Software ExperimentData Deprecation
3.4 years ago • updated 3.0 years ago shepherl 3.9k
4
votes
0
replies
949
views
News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
3.5 years ago shepherl 3.9k
1
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2
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1.4k
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News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
3.6 years ago shepherl 3.9k
0
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0
replies
1.1k
views
Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
3.6 years ago Vincent J. Carey, Jr. 6.7k
2
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4
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1.2k
views
Bioconductor package development
package R software development
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
3
votes
0
replies
1.4k
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
3.7 years ago • updated 3.6 years ago shepherl 3.9k
0
votes
2
replies
806
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 3.7 years ago by 3.9k • written 3.8 years ago by • 0
0
votes
0
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834
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News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
3.9 years ago shepherl 3.9k
0
votes
2
replies
823
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
0
votes
3
replies
1.0k
views
News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 4.0 years ago by ▴ 160 • written 4.1 years ago by 3.9k
4
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0
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820
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News: Bioconductor 3.11 is Released!
software bioconductor release packages News
4.0 years ago shepherl 3.9k
0
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0
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792
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.2 years ago shepherl 3.9k
0
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1
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863
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.4 years ago shepherl 3.9k
1
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1
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1.1k
views
How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
updated 4.4 years ago by ▴ 10 • written 4.4 years ago by ▴ 40
0
votes
0
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888
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.5 years ago shepherl 3.9k
0
votes
2
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1.6k
views
News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
4.6 years ago • updated 4.5 years ago shepherl 3.9k
2
votes
2
replies
1.0k
views
News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
4.5 years ago shepherl 3.9k
6
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0
replies
862
views
News: Bioconductor 3.10 is released!!
release software packages bioconductor News
4.5 years ago shepherl 3.9k
0
votes
0
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857
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.7 years ago • updated 4.6 years ago shepherl 3.9k
2
votes
0
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2.3k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
4.6 years ago Laurent Gatto 1.6k
0
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1
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1.0k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
4.8 years ago • updated 4.7 years ago shepherl 3.9k
0
votes
0
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752
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Job: Software Developer - BC Cancer Research Center, Vancouver BC
software bioinformatics sequecing Job
4.9 years ago jmaanaki • 0
0
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3
replies
1.1k
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.9 years ago shepherl 3.9k
0
votes
1
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874
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News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
5.0 years ago shepherl 3.9k
0
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1
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1.2k
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News: List of Deprecated Package Bioc 3.9
deprecate release devel software experimentdata News
5.2 years ago shepherl 3.9k
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
0
votes
1
reply
1.1k
views
News: List of Deprecated Package Bioc 3.9
deprecate release software devel News
5.4 years ago shepherl 3.9k
0
votes
0
replies
1.1k
views
News: DEADLINE: All packages to pass R CMD build and R CMD check
release software experimentdata workflows News
6.1 years ago shepherl 3.9k
0
votes
8
replies
2.2k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation software software error
updated 7.9 years ago by ★ 4.3k • written 8.0 years ago by ▴ 10
1
vote
3
replies
1.6k
views
Are there any bioconductor github mirrors for data packages?
software bioc-devel developers R
updated 8.5 years ago by ★ 8.2k • written 8.5 years ago by • 0
50 results • Page 1 of 1
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Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0
I created a DESeqDataSet object using DESeqDataSetFromMatrix function. I don't anticipate any mismatching or mixup of sampleIDs.
Answer: Assymetric MA plot with no overall trend by Michael Love 42k
> so many upregulated genes vs. downregulated, which I think is worrying Take a look at the plotCounts for a couple of the up-regulated …
Comment: Can I trust the differential expression analysis when the two groups overlap on by Michael Love 42k
I'm wondering about sample table mixup. How have you merged your sequencing data with the phenotype data (`colData`)?
Comment: Can I trust the differential expression analysis when the two groups overlap on by Eric Katagirya • 0
Thanks @mikelove , Using vst or rlog doesn't improve the segregation nor is there a remarkable difference when I use 1000 or 2000 most vari…
Answer: Batch effect correction: methylome data by zhouwanding ▴ 10
I agree that the batch variable should be better modeled as a co-variate than explicit batch correction. There is also RUVm (https://www.nc…
Votes
Ensembl 112 has been released.
A: Diffbind results - non uniform width
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Answer: Error EPICv2 ChAMP
Comment: Store output of matchPWM()
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