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Showing :
affy
•
reset
0
votes
0
replies
1.5k
views
Help for affy
affy
process
probe
9.9 years ago
weizhong_2007
• 0
2
votes
2
replies
9.4k
views
Convert Expression Set into a Matrix or Data Frame
microarray
biobase
affy
R
updated 9.9 years ago by
Diego Diez
▴ 760 • written 9.9 years ago by
hshabbeer.09
• 0
0
votes
2
replies
1.6k
views
Collation of differentially expressed genes in Limma
affy
limma
affy
limma
updated 10.0 years ago by
Jenny Drnevich
★ 2.0k • written 20.4 years ago by
Donald Dunbar
▴ 50
2
votes
7
replies
2.3k
views
GEO MicroArray Download, Annotation, and Main Probe Filtering
microarray
affy
biomart
10.0 years ago
anthonycolombo60
• 0
0
votes
2
replies
4.4k
views
wilcoxon signed rank test for data frame
wilcoxon signed rank test
data frame
affy
10.0 years ago
Smeeta Shrestha
▴ 20
0
votes
2
replies
1.5k
views
coefmap plot - label colors
affy
coefmap
nmf
updated 10.0 years ago by
James W. MacDonald
68k • written 10.0 years ago by
thrabe
• 0
2
votes
4
replies
2.8k
views
arrayQualityMetrics error: Error: Unknown parameters: cex.axis
affy
microarray
arrayqualitymetrics
updated 10.0 years ago by
Wolfgang Huber
★ 13k • written 10.0 years ago by
Maria Keays
▴ 30
2
votes
3
replies
3.0k
views
RAW data in matrix: RMA normalization?
RMA
affy
raw expression
updated 10.0 years ago by
James W. MacDonald
68k • written 10.0 years ago by
alexvpickering
▴ 110
0
votes
2
replies
2.4k
views
CEL to Cibersort mix files, fails find Affymatrix specs
affy
cel
10.1 years ago • updated 10.0 years ago
thrabe
• 0
0
votes
1
reply
1.3k
views
Looking for a package allowing Affymetrix MoGene2.1ST processing
affy
xps
rma
oligo
updated 10.1 years ago by
Guido Hooiveld
★ 4.1k • written 10.1 years ago by
steppydeklin
▴ 10
0
votes
8
replies
2.1k
views
mas5calls error question
mas5 affy
mas5
affy mas5
mas5calls
affy
updated 10.1 years ago by
James W. MacDonald
68k • written 10.1 years ago by
suarez.samuel
• 0
0
votes
2
replies
1.9k
views
Help with annotating eset (Affy Arrays)
Biobase
annotationdbi
affy
microarray
10.2 years ago
rumroses12
• 0
0
votes
1
reply
849
views
xy2indices in Affy package : nr or nc parameter
xy2indices
affy
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
VeloSand
• 0
5
votes
4
replies
2.2k
views
Is there any tutorial to perform Mouse/Human Transcriptome microarrays 1.0 ?
mta10
tutorial
affy
updated 10.2 years ago by
James W. MacDonald
68k • written 10.2 years ago by
jacorvar
▴ 40
2
votes
1
reply
1.9k
views
Error in using library (affy)
affy
R
bioconductor
microarray
updated 10.3 years ago by
Dan Tenenbaum
★ 8.2k • written 10.3 years ago by
yalaman2
• 0
0
votes
5
replies
2.5k
views
MassiR Gender Prediction on Affy microarrays
microarray
affy
massiR
10.3 years ago
t.demooij
• 0
3
votes
4
replies
4.5k
views
R Script for selecting differentially expressed genes
limma
microarray
affy
deg
10.3 years ago
contato.carlosbau
▴ 10
2
votes
1
reply
1.6k
views
Best way to do quality control and analysis on Exon arrays
Annotation
Cancer
affy
exonmap
Annotation
Cancer
affy
exonmap
updated 10.4 years ago by
nicholaserho
▴ 10 • written 16.5 years ago by
Daniel Brewer
★ 1.9k
3
votes
6
replies
3.6k
views
WGCNA normalized CDF to use, WGCNA Intramodular connectivity
wgcna
affymetrix microarrays
affy
updated 10.5 years ago by
Peter Langfelder
★ 3.0k • written 10.6 years ago by
akridgerunner
▴ 30
0
votes
1
reply
1.8k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
10.5 years ago
bruce.moran
▴ 30
1
vote
7
replies
3.5k
views
reading a *.txt file of expression values into an AffyBatch
affy
normalization
rma
updated 10.5 years ago by
James W. MacDonald
68k • written 10.5 years ago by
m
• 0
0
votes
3
replies
1.3k
views
i need a tab-delimited format
microarray
affy
10.5 years ago
Angel
▴ 40
1
vote
4
replies
2.0k
views
mutually add a tab in the beggining of the header to make it a valid RMA format
software error
probe
affy
RMA
10.5 years ago
Angel
▴ 40
6
votes
5
replies
3.4k
views
install package from local zip file
affy
10.5 years ago
Angel
▴ 40
4
votes
3
replies
2.4k
views
MAS 5 package
affy
updated 10.5 years ago by
svlachavas
▴ 840 • written 10.5 years ago by
Angel
▴ 40
0
votes
1
reply
2.0k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy
oligo
microarray
preprocessing
microrna
updated 10.5 years ago by
James W. MacDonald
68k • written 10.5 years ago by
enthelesia
• 0
1
vote
1
reply
801
views
Error in a method
affy
updated 10.5 years ago by
James W. MacDonald
68k • written 10.5 years ago by
tanujadas55
• 0
0
votes
5
replies
6.1k
views
How to do Affy ST array analysis
Annotation
Normalization
hgu133a
probe
affy
oligo
Annotation
Normalization
hgu133a
probe
updated 10.6 years ago by
benhrif.oussama
• 0 • written 11.7 years ago by
Guest User
★ 13k
0
votes
3
replies
1.7k
views
namespace problem running GEOquery and justRMA in same session
affy
geoquery
10.6 years ago
Ty Thomson
▴ 100
0
votes
1
reply
2.0k
views
simpleaffy segmentation fault
Survival
probe
genefilter
affy
affyio
Survival
probe
genefilter
affy
affyio
updated 10.6 years ago by
vlagani
• 0 • written 19.0 years ago by
Sucheta Tripathy
▴ 170
1
vote
2
replies
3.9k
views
Affy HTA 2.0 array analysis
Annotation
affy
Annotation
affy
updated 10.6 years ago by
Jason Hubbard
▴ 20 • written 12.3 years ago by
He, Yiwen NIH/CIT
▴ 360
9
votes
8
replies
4.2k
views
LIMMA producing too many significant results
LIMMA
limma design matrix
affy
updated 10.7 years ago by
Steve Lianoglou
★ 13k • written 10.7 years ago by
akridgerunner
▴ 30
2
votes
4
replies
2.0k
views
Help with microarray analysis (forming cdf files)
microarray
affy
makecdfenv
updated 10.7 years ago by
James W. MacDonald
68k • written 10.7 years ago by
SSK
▴ 10
0
votes
0
replies
1.2k
views
Processing K12 probe data from E. coli 2.0
affy
normalization
10.7 years ago
cporter
• 0
0
votes
1
reply
1.0k
views
Best way to load .cel files so as it consumes less memory
affy
read in cel files
updated 10.7 years ago by
svlachavas
▴ 840 • written 10.7 years ago by
dhwani.dholakia
• 0
0
votes
1
reply
2.1k
views
Reading in and normalising ht-hgu133a and hgu133a files together
hgu133a
rma
normalization
affy
updated 10.7 years ago by
svlachavas
▴ 840 • written 10.7 years ago by
parisa_1986
• 0
0
votes
1
reply
3.6k
views
Array Express HuGene-1_1-st-v1 CDF problem
cdf
microarray
affy
updated 10.7 years ago by
James W. MacDonald
68k • written 10.7 years ago by
mlyall
• 0
0
votes
0
replies
1.1k
views
Support for MouseDivGeno arrays in Bioconductor
snpchip
microarray
affy
10.7 years ago
Sean Davis
21k
1
vote
10
replies
6.1k
views
How to use brainarray custom cdf with any bioconductor package?
affy
oligo
customcdf
11.1 years ago • updated 10.7 years ago
rishi.dasroy
▴ 20
0
votes
3
replies
3.2k
views
Reading Affymetrix data from pd.hugene.2.0.st using affy
affy
pd.hugene.2.0.st
hugene20
annotation
microarray
10.8 years ago
kanacska
▴ 10
1
vote
3
replies
2.4k
views
QC probes in HTA2-0
affy
qc
simpleaffy
HTA
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
Guilherme Rocha
▴ 40
0
votes
1
reply
1.0k
views
several gene names for a probeID in affymetrix annotation file
affy
annotation
updated 10.8 years ago by
James W. MacDonald
68k • written 10.8 years ago by
nazaninhoseinkhan
• 0
0
votes
1
reply
3.1k
views
Problem in the beginning
affy
10.8 years ago
zillurbmb51
• 0
0
votes
2
replies
2.1k
views
Affymetrix file with probe set id
probe
affy
PROcess
probe
affy
PROcess
updated 10.8 years ago by
nazaninhoseinkhan
• 0 • written 21.3 years ago by
Srinivas Iyyer
▴ 600
0
votes
3
replies
3.3k
views
filtering out probes with no gene symbol from expressionSet
probe
filter
subset
gene symbol
affy
10.8 years ago
alakatos
▴ 130
0
votes
2
replies
3.9k
views
AffyMetrix CEL file; data is already transformed too log2
affy
microarray
bioinformatics
10.9 years ago
kanacska
▴ 10
0
votes
3
replies
2.6k
views
Affymetrix ReadAffy() can't read my CEL file
microarray
affy
cancer
hgu133plus2
package
updated 10.9 years ago by
James W. MacDonald
68k • written 10.9 years ago by
kanacska
▴ 10
1
vote
3
replies
2.3k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy
affy
affyQCReport
10.9 years ago
federico.comoglio
▴ 100
4
votes
6
replies
6.2k
views
Proper way to build phenoData object?
limma
affy
biobase
updated 10.9 years ago by
Guido Hooiveld
★ 4.1k • written 10.9 years ago by
chandlerjd58
▴ 10
2
votes
6
replies
3.2k
views
Questions about analysis of GeneChip Rat Gene 2.0 ST Array
microarray
affy
oligo
annotation
10.9 years ago
khosoda
• 0
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