Showing : annotation • reset
1
vote
3
replies
910
views
Use Tx2Gene for Annotation
deseq2 annotation r
updated 5.4 years ago by 43k • written 5.4 years ago by • 0
1
vote
6
replies
13k
views
Change fontsize/remove name of annotation ComplexHeatmap package
r rnaseq complexHeatmap annotation
updated 5.4 years ago by ▴ 290 • written 5.4 years ago by ▴ 10
0
votes
0
replies
826
views
The error when using "coMET" package
software error annotation
5.4 years ago yueli.yao • 0
3
votes
2
replies
1.6k
views
Goseq analysis related help.
annotation goseq
updated 5.4 years ago by ★ 13k • written 5.4 years ago by • 0
0
votes
2
replies
1.1k
views
Differential analysis of protein spectral counts using msnSet object
annotation edger
updated 5.4 years ago by ★ 4.0k • written 5.4 years ago by • 0
1
vote
2
replies
900
views
Annotation best practices
annotation
updated 5.4 years ago by 68k • written 5.4 years ago by ▴ 20
0
votes
0
replies
1.4k
views
News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
5.4 years ago shepherl 4.2k
0
votes
3
replies
1.6k
views
extracting the genes associated with a specific pathway
pathway KEGG annotation annotationhub
updated 5.4 years ago by 68k • written 5.4 years ago by ▴ 670
0
votes
0
replies
1.1k
views
News: Updated annotation packages
annotation news News
5.4 years ago kayla.interdonato ▴ 160
0
votes
2
replies
1.2k
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
4
votes
10
replies
4.2k
views
how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by ▴ 10
1
vote
0
replies
1.6k
views
News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
ensembl annotation ensembldb News
5.5 years ago Johannes Rainer ★ 2.1k
1
vote
2
replies
2.2k
views
DEXSeq Python script dexseq_prepare_annotation.py unable to process my .gtf file
dexseq python gtf gff3 annotation
5.5 years ago Raito92 ▴ 60
1
vote
1
reply
1.3k
views
News: Issues with annotation packages
annotation news release News
5.5 years ago kayla.interdonato ▴ 160
3
votes
3
replies
1.3k
views
AnnotationForge run by three days and do not end
annotation AnnotationForge
5.5 years ago Marcelo Laia ▴ 450
11
votes
15
replies
5.8k
views
Annotation for Affymetrix GeneChip PrimeView.
annotation
updated 5.5 years ago by ★ 4.0k • written 5.5 years ago by • 0
0
votes
3
replies
1.6k
views
News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 5.5 years ago by ▴ 160 • written 5.6 years ago by 4.2k
0
votes
0
replies
1.4k
views
News: Bioconductor 3.11 OrgDb and TxDb packages now available
annotation news release News
5.5 years ago kayla.interdonato ▴ 160
7
votes
11
replies
4.1k
views
Updating Gene Annotation in GeneSetCollection {GSEABase}
GSEABase annotation gsea gsva GeneSetCollection
updated 5.5 years ago by ★ 3.4k • written 5.5 years ago by ▴ 60
2
votes
2
replies
2.7k
views
SingleR analysis with integrated data
annotation
updated 5.5 years ago by ▴ 10 • written 5.5 years ago by ▴ 10
4
votes
8
replies
9.4k
views
gene ID conversion
annotation
updated 2.7 years ago by ★ 4.0k • written 5.5 years ago by ▴ 20
0
votes
2
replies
1.0k
views
GO analysis without gene IDs?
deseq2 annotation go
updated 5.5 years ago by 43k • written 5.5 years ago by ▴ 60
2
votes
16
replies
2.6k
views
DESeq2 annotation file
annotation
5.6 years ago zen • 0
0
votes
1
reply
768
views
How to upload a custom genome build at Galaxy
annotation
5.6 years ago vidar.blikstad • 0
0
votes
3
replies
1.9k
views
Topgo, Deseq and KEGG pathway
annotation cancer
updated 5.6 years ago by 4.2k • written 5.6 years ago by • 0
0
votes
2
replies
12k
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
updated 2.6 years ago by • 0 • written 5.6 years ago by • 0
0
votes
5
replies
1.1k
views
TxDb.Hsapiens.UCSC.hg38.knownGene gene locus error?
annotation
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
0
votes
1
reply
729
views
Unexpected format to the list of available marts
annotation
updated 5.6 years ago by ★ 6.6k • written 5.6 years ago by • 0
0
votes
4
replies
1.6k
views
<N/A> Gene Ontology while using the AnnotationDbi package
go annotation annotationdbi
5.6 years ago CUCIO199 • 0
0
votes
8
replies
2.2k
views
SingleR analysis with just a subset of Immgen data
annotation
updated 5.6 years ago by ★ 29k • written 5.6 years ago by ▴ 10
0
votes
0
replies
1.1k
views
News: Bioconductor 3.11 db0s are available
annotation db0 news release News
5.6 years ago kayla.interdonato ▴ 160
1
vote
4
replies
1.1k
views
GenomicScores cannot find phastCons30way.UCSC.hg38 though package is loaded
annotation
updated 5.6 years ago by ★ 3.4k • written 5.6 years ago by ▴ 470
0
votes
3
replies
738
views
DEseq2 design tutorial with multiple experimental factors
deseq2 annotation normalization
5.6 years ago christophe.vanhaver • 0
0
votes
1
reply
729
views
can not load org.dm.eg.db library
annotation
updated 5.6 years ago by 25k • written 5.6 years ago by • 0
5
votes
10
replies
2.2k
views
tximport and stevia, how to build tx2gene without any reference genome
deseq2 annotation
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 60
0
votes
1
reply
698
views
TxDb.Hsapiens.UCSC.hg38.knownGene immunoglobulin
annotation
updated 5.6 years ago by 16k • written 5.6 years ago by • 0
2
votes
4
replies
5.1k
views
How to get list of all GOIDs with all genes in each GO term?
go annotation
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
1
vote
3
replies
1.2k
views
Extract the relevant information of the genes sets from the Bioconductor annotation package
org.Rn.eg.db annotation go
updated 5.6 years ago by 68k • written 5.6 years ago by • 0
1
vote
4
replies
3.1k
views
Problem installing annotation packages AnnotationDbi & BiocFileCache
software error annotation
written 5.7 years ago by • 0
0
votes
0
replies
1.3k
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
5.7 years ago shepherl 4.2k
1
vote
2
replies
1.4k
views
Microarray expression analysis
annotation
updated 5.7 years ago by 53k • written 5.7 years ago by • 0
0
votes
0
replies
1.4k
views
Error in trying to convert a gff file -> txdb object using GenomicFeatures::makeTxDbFromGFF()
GenomicFeatures annotation gff GenomicRanges
updated 5.7 years ago by 4.2k • written 5.7 years ago by • 0
1
vote
1
reply
2.5k
views
How to annotate the Affymetrix data HTA-2.0 with oligo
annotation affy normalization
updated 5.7 years ago by ★ 4.1k • written 5.7 years ago by • 0
9
votes
10
replies
2.4k
views
Mapping of GENE symbols into ENTREZ
limma annotation Gene
6.2 years ago • updated 5.7 years ago omarrafiqued ▴ 50
2
votes
4
replies
1.6k
views
Help with Missing Gene from hg38
annotation genome hg38 TxDb.Hsapiens.UCSC.hg38.knownGene BSgenome.Hsapiens.UCSC.hg38
updated 5.7 years ago by ▴ 160 • written 5.7 years ago by • 0
0
votes
3
replies
995
views
biomaRt not returning correct lists
biomart annotation
5.7 years ago nkuperwasser • 0
0
votes
1
reply
2.6k
views
Error in .updateHubDB(hub_bfc, .class, url, proxy, localHub) :
annotation singlecell rna-seq
updated 5.7 years ago by 4.2k • written 5.7 years ago by • 0
6
votes
5
replies
1.6k
views
PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene
updated 5.8 years ago by 4.2k • written 5.8 years ago by ▴ 150
0
votes
8
replies
5.1k
views
failling to install biomaRt
annotation
updated 3.9 years ago by • 0 • written 5.8 years ago by • 0
1
vote
2
replies
936
views
generate a phastCons GScores annotation object from 7G hg38.phastCons30way.bw file?
annotation
updated 5.8 years ago by ★ 3.4k • written 5.8 years ago by ▴ 470
1,978 results • Page 3 of 40
Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards • All
Popular Question to shepherl 4.2k
Popular Question to Hervé Pagès 16k
Popular Question to Ou, Jianhong ★ 1.3k
Popular Question to Maria Doyle ▴ 100
Popular Question to Gordon Smyth 53k
Locations • All
United States, 32 minutes ago
Germany, 1 hour ago
United States, 3 hours ago
The city by the bay, 5 hours ago
China, 5 hours ago
Traffic: 1255 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6