Showing : anova • reset
2
votes
6
replies
4.2k
views
How to make boxplot with pairwise and overall p value from Limma
t.test boxplot limma anova
19 months ago Chris ▴ 20
2
votes
2
replies
1.0k
views
2-Way Repeated Measures ANOVA - Affymetrix
AffymetrixChip MicroarrayData Anova
3.0 years ago evan.j.williams ▴ 10
3
votes
4
replies
1.9k
views
Pipeline for an Anova-like analysis in edgeR
edgeR anova rna-seq
4.5 years ago Antonio M. • 0
2
votes
3
replies
2.1k
views
ANOVA Limma
ANOVA limma
updated 4.7 years ago by 68k • written 4.7 years ago by ▴ 10
1
vote
1
reply
1.1k
views
DESeq2 interactions genotype condition code needed
DESeq2 anova condition genotypeeval
updated 4.9 years ago by ★ 5.0k • written 4.9 years ago by ▴ 20
2
votes
4
replies
3.6k
views
Compare 3 RNASeq groups with no control in DESeq2
anova RNASeqData tukeyTest DESeq2
5.0 years ago • updated 4.9 years ago ecg1g15 ▴ 30
5
votes
13
replies
4.1k
views
DESeq2 multiple group comparison (ANOVA) with batch effect
DESeq2 DEG ANOVA Batch effect Comparison
updated 6.2 years ago by 43k • written 6.2 years ago by • 0
3
votes
3
replies
2.4k
views
Differential Expression Analysis in edgeR using Anova
edger anova gene expression Dispersion
updated 6.4 years ago by • 0 • written 6.8 years ago by • 0
0
votes
1
reply
2.2k
views
edgeR 2-way ANOVA testing
edger ANOVA
updated 7.0 years ago by 53k • written 7.0 years ago by • 0
5
votes
6
replies
2.1k
views
nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
limma anova decidetests
updated 7.1 years ago by 53k • written 7.1 years ago by ▴ 280
3
votes
1
reply
1.4k
views
ANOVA-like test via treat() in limma
limma anova
updated 7.3 years ago by 53k • written 7.3 years ago by ▴ 120
1
vote
1
reply
1.2k
views
Getting Significance for second factor (bioreplicate/subject) when using limma.
limma anova
updated 7.4 years ago by ★ 29k • written 7.4 years ago by ▴ 10
1
vote
1
reply
1.1k
views
How to calculate one way unpaired Anova test with multi column data in R
Anova
updated 7.6 years ago by 68k • written 7.6 years ago by • 0
1
vote
8
replies
2.0k
views
design versus interaction term similarities and/or differences?
deseq2 ANOVA design interaction term
updated 7.7 years ago by 43k • written 7.7 years ago by • 0
0
votes
3
replies
1.8k
views
Anova test on gene expression data
Anova gene expression
updated 8.0 years ago by 68k • written 8.0 years ago by • 0
2
votes
6
replies
2.8k
views
Three way-interaction on voom (limma) data, including a factor with > 2 levels
RNASeq limma voom anova
updated 3.7 years ago by ▴ 100 • written 8.3 years ago by ▴ 90
2
votes
2
replies
2.7k
views
EdgeR -ANOVA-like test vs testing individual contrasts
EdgeR ANOVA t-test contrast
updated 8.4 years ago by ★ 29k • written 8.4 years ago by • 0
0
votes
6
replies
5.6k
views
How to perform ANOVA to calculate differential gene expression with three categories
anova
updated 8.4 years ago by 53k • written 8.4 years ago by ▴ 50
2
votes
3
replies
2.6k
views
edgeR ANOVA-like analysis
edger rnaseq anova
updated 8.6 years ago by ★ 29k • written 8.6 years ago by • 0
1
vote
4
replies
1.9k
views
DESeq2 ANOVADEV giving strange result
deseq2 anova
updated 9.0 years ago by 43k • written 9.0 years ago by ▴ 20
3
votes
3
replies
2.7k
views
Explanation of an ANOVA approach of multiple coefficients in limma with topTable in a microarray analysis
limma ANOVA topTable microarray
updated 9.1 years ago by 53k • written 9.1 years ago by ▴ 90
0
votes
5
replies
2.4k
views
MetagenomSeq, perform anova or kruskall wallis with three groups ?
metagenomeseq anova metagenomics
9.5 years ago David ▴ 860
3
votes
4
replies
2.1k
views
how to use edgeR analysis RNA-seq data with a obvious deviation sample
edger RNA-seq anova
updated 9.6 years ago by ★ 29k • written 9.6 years ago by • 0
2
votes
4
replies
1.9k
views
Complex ANOVA analysis in EdgeR
edger anova sequencing
updated 9.7 years ago by ★ 29k • written 9.7 years ago by • 0
2
votes
1
reply
4.0k
views
RNA-seq Differential expression using 3 groups
rnaseq anova deseq2 edger genespring
10.3 years ago BM • 0
3
votes
14
replies
5.3k
views
Moderated t-test in Anova
anova moderated t-test
updated 10.4 years ago by 53k • written 10.4 years ago by • 0
8
votes
4
replies
6.7k
views
Multiple Comparisons EdgeR
edger multiple comparisons anova glm
updated 10.4 years ago by ★ 7.9k • written 10.4 years ago by ▴ 20
4
votes
2
replies
9.9k
views
DESeq2 LRT output help
deseq2 LRT anova
10.5 years ago rclaire ▴ 20
3
votes
1
reply
1.9k
views
edgeR: glmLRT equivalence between tests with cell means model and factor levels model
edger anova
updated 10.5 years ago by ★ 29k • written 10.5 years ago by • 0
2
votes
8
replies
4.4k
views
EdgeR. Analysis with pairing across condition and treatment. Design Matrix
edger ANOVA Design matrix
updated 10.8 years ago by 53k • written 10.8 years ago by • 0
3
votes
2
replies
2.9k
views
EdgeR User Guide. Analysis with multiple factors. Section 3.3.1
edger anova
updated 10.8 years ago by 53k • written 10.8 years ago by • 0
4
votes
3
replies
11k
views
DESeq2 One-way ANOVA with 3 sample groups?
deseq2 Anova
updated 4.0 years ago by 43k • written 11.1 years ago by ▴ 10
32 results • Page 1 of 1
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Comment: copy number/LOH for Affy 100K by igkryycpinmshzugby • 0
Hi John For copy number and LOH analysis from Affymetrix 100K SNP arrays you can use aroma.affymetrix or CRLMM packages in Bioconductor. …
Comment: Integration: Paired-end vs healthy single-end from a different source by igkryycpinmshzugby • 0
Yes, Option 1 (technical homogenization) reprocessing paired-end samples as single-end using only R1 is the most defensible approach when l…
Answer: Integration: Paired-end vs healthy single-end from a different source by James W. MacDonald 68k
If by reprocess you mean generate libraries and re-sequence, then that's something you could do. Otherwise the biological and technical dif…
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
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Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
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