Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
biobase
•
reset
8
votes
2
replies
3.0k
views
exprs function - clash with dplyr
exprs
dplyr
Biobase
6.0 years ago
Wolfgang Huber
★ 13k
6
votes
13
replies
2.0k
views
Comparison of Column of AnnotatedDataFrame
biobase
AnnotatedDataFrame
7.6 years ago
Dario Strbenac
★ 1.5k
5
votes
7
replies
1.5k
views
Difficulty extending ExpressionSet
biobase
expressionset
eset
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
andrew.birnberg
▴ 20
4
votes
6
replies
5.2k
views
Proper way to build phenoData object?
limma
affy
biobase
updated 9.3 years ago by
Guido Hooiveld
★ 4.0k • written 9.3 years ago by
chandlerjd58
▴ 10
4
votes
3
replies
1.2k
views
How to set custom Brainarray annotation for Biobase ExpressionSet object?
affymetrix microarrays
expressionset
biobase
annotation
brainarray
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
lykhenko.olexandr
• 0
4
votes
8
replies
2.3k
views
Help! ExpressionSet function from Biobase not working! (issue with data structure??)
limma
biobase
ExpressionSet
updated 4.1 years ago by
Gordon Smyth
50k • written 4.1 years ago by
sa825
• 0
4
votes
8
replies
2.4k
views
ALL dataset, correct syntax using the exprs call?
ALL
bioconductor
biobase
exprs
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
detroit.drive
• 0
3
votes
3
replies
1.9k
views
Is there a way to save and open an expression set?
biobase
updated 4.6 years ago by
Kevin Blighe
★ 3.9k • written 4.6 years ago by
salamandra
▴ 20
3
votes
3
replies
246
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
5 weeks ago • updated 4 weeks ago
jacques.imbert
• 0
3
votes
4
replies
2.1k
views
R session aborted: prcomp
Biobase
stats
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
Gero
• 0
2
votes
3
replies
1.7k
views
GEOquery problem in calling the function in Rstudio
R
software error
biobase
geoquery
updated 6.8 years ago by
James W. MacDonald
65k • written 6.8 years ago by
jemaatita
• 0
2
votes
4
replies
1.4k
views
Failed to install Biobase
GSVA
Biobase
updated 13 months ago by
James W. MacDonald
65k • written 13 months ago by
johann.brisseau
• 0
2
votes
10
replies
1.8k
views
Am I on the right tracks with a 3 factor design in Limma?
r
limma
design matrix
biobase
updated 5.9 years ago by
Gordon Smyth
50k • written 5.9 years ago by
reubenmcgregor88
• 0
2
votes
2
replies
8.0k
views
Convert Expression Set into a Matrix or Data Frame
microarray
biobase
affy
R
updated 8.3 years ago by
Diego Diez
▴ 760 • written 8.3 years ago by
hshabbeer.09
• 0
2
votes
3
replies
2.0k
views
Suppress messages from ALL calls to load package
suppressPackageStartupMessages
Biobase
updated 2.5 years ago by
ATpoint
★ 4.1k • written 2.5 years ago by
Elizabeth Purdom
▴ 210
2
votes
2
replies
4.4k
views
AnnotatedDataFrame is not a defined class
annotatedDataFrame
R
Biobase
9.5 years ago • updated 5.8 years ago
nonCodingGene
▴ 10
2
votes
1
reply
1.7k
views
Convert AnnotatedDataFrame S4 object from GEO datasets to Seurat Object
biobase
SingleCellData
seurat
SingleCell
updated 2.3 years ago by
James W. MacDonald
65k • written 2.3 years ago by
NGS_enthusiast
• 0
2
votes
4
replies
2.5k
views
error: namespace Loading DESeq2
deseq2
error namespace
biobase
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
jpcourneya
• 0
2
votes
2
replies
1.2k
views
aaMap Import "Not Available"
bioconductor
biobase
aaMap
updated 5.8 years ago by
rreck
▴ 20 • written 5.8 years ago by
detroit.drive
• 0
2
votes
0
replies
633
views
PREDA shiny Golem issue
PREDAsampledata
PREDA
Biobase
2.5 years ago
Gavin
▴ 20
2
votes
2
replies
2.4k
views
Error in log2(exprs(eSet)) : non-numeric argument to mathematical function
microarray
biobase
5.9 years ago
charlesgwellem
▴ 10
2
votes
5
replies
3.8k
views
How to use t.test to select best features out of multiple features?
microarray
biobase
feature selection
t.test
R
updated 8.7 years ago by
svlachavas
▴ 830 • written 8.7 years ago by
babumanish837
▴ 10
1
vote
4
replies
620
views
Help for SeqVarData function
Biobase
SeqVarTools
9 months ago
pjuge
• 0
1
vote
0
replies
807
views
Job:
Computational Biologist at Denali Therapeutics
Biobase
biomarker
neuroscience
biotech
3.5 years ago
sandmann.t
▴ 70
1
vote
3
replies
906
views
After the Support Site upgrade: how can I order posts by creation (not reply) time?
SupportSiteUI
Biobase
3.6 years ago
Axel Klenk
★ 1.0k
1
vote
3
replies
1.5k
views
Boxplot and Identification of DEG
limma
biobase
geoquery
updated 6.5 years ago by
Aaron Lun
★ 28k • written 6.5 years ago by
nia
▴ 30
1
vote
2
replies
3.1k
views
how to update feature data with different dimensions in expressionSet?
biobase
eSet
expressionSet
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
Guido Hooiveld
★ 4.0k
1
vote
3
replies
3.1k
views
How to use expression set object to select genes using different gene selection methods
microarray
biobase
geoquery
updated 8.7 years ago by
svlachavas
▴ 830 • written 8.7 years ago by
babumanish837
▴ 10
1
vote
3
replies
2.4k
views
Error installing Biobase on R 3.1.2
biobase
updated 9.3 years ago by
Johannes Rainer
★ 2.0k • written 9.3 years ago by
yannick.lippi
• 0
1
vote
2
replies
2.5k
views
making ExpressionSet from RGList via NChannelSet for use with 'sva'
biobase
convert
sva
ringo
arrayqualitymetrics
updated 8.2 years ago by
Gordon Smyth
50k • written 8.2 years ago by
chris.rock
• 0
0
votes
1
reply
1.2k
views
New Package: annaffy
Annotation
GO
rgu34a
probe
Biobase
annaffy
Annotation
GO
rgu34a
probe
Biobase
annaffy
updated 21.8 years ago by
Laurent Gautier
★ 2.3k • written 21.8 years ago by
Colin A. Smith
▴ 20
0
votes
0
replies
901
views
Re: PDF files
Microarray
Cancer
Biobase
affy
Microarray
Cancer
Biobase
affy
21.9 years ago
Laurent Gautier
★ 2.3k
0
votes
4
replies
870
views
Problem with invalid GO term in HyperGResult object - NOT solved
GO
Biobase
GO
Biobase
updated 16.7 years ago by
James W. MacDonald
65k • written 16.7 years ago by
Martin Morgan
25k
0
votes
1
reply
1.6k
views
Problems with url/download and http_proxy
Biobase
annotate
edd
geneplotter
tkWidgets
ASSIGN
Biobase
annotate
edd
geneplotter
updated 21.9 years ago by
ripley@stats.ox.ac.uk
▴ 50 • written 21.9 years ago by
Warnes, Gregory R
▴ 460
0
votes
2
replies
1.1k
views
Web site suggestions
Biobase
edd
ROC
Biobase
edd
ROC
21.9 years ago
Warnes, Gregory R
▴ 460
0
votes
1
reply
908
views
Error in .nextMethod(e1, e2) working with R2.0. in Windows
Microarray
Biobase
Microarray
Biobase
16.7 years ago
Martin Morgan
25k
0
votes
0
replies
1.2k
views
Error in xval: No Direct or Inherited Method for this call
Survival
Biobase
genefilter
MLInterfaces
Survival
Biobase
genefilter
MLInterfaces
17.6 years ago
Martin Morgan
25k
0
votes
1
reply
937
views
installation problems
Biobase
Biobase
updated 22.0 years ago by
Laurent Gautier
★ 2.3k • written 22.0 years ago by
Beth Wilmot
▴ 120
0
votes
1
reply
1.1k
views
biobase
Biobase
affy
Biobase
affy
updated 22.0 years ago by
Laurent Gautier
▴ 150 • written 22.1 years ago by
Vawter, Marquis
▴ 70
0
votes
0
replies
1.0k
views
Does anyone have the same problem with new("ExpressionSet", ...) ?
Annotation
Biobase
Annotation
Biobase
16.7 years ago
Martin Morgan
25k
0
votes
1
reply
1.0k
views
Biobase version 1.0 on windows XP...
Biobase
Biobase
updated 22.1 years ago by
Anthony Rossini
▴ 530 • written 22.1 years ago by
Joshua Betcher
▴ 90
0
votes
0
replies
1.5k
views
peer review process/DATE CORRECTION
Biobase
annotate
edd
genefilter
geneplotter
rhdf5
multtest
ROC
tkWidgets
affy
AnnBuilder
22.1 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
9
replies
1.9k
views
problem with duplicateCorrelation and ExpressionSet objects
GO
Survival
cdf
Biobase
graph
limma
gcrma
annaffy
affyPLM
simpleaffy
biomaRt
Category
updated 17.0 years ago by
Seth Falcon
★ 7.4k • written 17.0 years ago by
Jenny Drnevich
★ 2.2k
0
votes
4
replies
1.1k
views
Communicating gene-probe relationships to sam
SNP
Biobase
siggenes
SNP
Biobase
siggenes
18.1 years ago • updated 18.0 years ago
Charles Crane
▴ 30
0
votes
0
replies
854
views
ABPkgBuilder Error; Again
Annotation
GO
Cancer
Organism
Biobase
annotate
AnnBuilder
PROcess
Annotation
GO
Cancer
18.8 years ago
Barry Henderson
▴ 250
0
votes
1
reply
1.1k
views
Problems accessing the Milan package through the vignettes Explorer
Cancer
Biobase
annotate
edd
geneplotter
multtest
tkWidgets
affydata
vsn
graph
hexbin
updated 20.9 years ago by
John Zhang
★ 2.9k • written 21.0 years ago by
Fátima Núñez
▴ 130
0
votes
1
reply
662
views
Biobase/reposTools Dependency
Biobase
reposTools
Biobase
reposTools
updated 20.9 years ago by
rgentleman
★ 5.5k • written 20.9 years ago by
Colin A. Smith
▴ 220
0
votes
0
replies
858
views
Error Installation for Genefilter
Biobase
genefilter
Biobase
genefilter
20.9 years ago
Lisa Devereaux
▴ 20
0
votes
1
reply
797
views
Problems
Biobase
reposTools
Biobase
reposTools
updated 20.9 years ago by
rgentleman
★ 5.5k • written 20.9 years ago by
Ramzi Feghali
▴ 10
0
votes
1
reply
798
views
Difficulty in installing Biobase 1.3.22
GO
Biobase
GO
Biobase
updated 21.0 years ago by
Jeff Gentry
★ 3.9k • written 21.0 years ago by
lshen@intergate.com
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Answer: all variables in design formula must be columns in colData (Deseq2) error
by
ATpoint
★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup()
by
Gordon Smyth
50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons
by
Michael Love
42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs
by
Michael Love
42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Awards
• All
Popular Question
to
Dario Strbenac
★ 1.5k
Popular Question
to
Vincent J. Carey, Jr.
6.7k
Popular Question
to
Koen Van den Berge
▴ 180
Popular Question
to
shepherl
3.9k
Popular Question
to
Ken C
• 0
Locations
• All
Germany,
36 minutes ago
United States,
53 minutes ago
Hong Kong,
1 hour ago
UPF, Barcelona, Spain,
1 hour ago
Israel,
1 hour ago
Traffic: 360 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6