Showing : chipqc • reset
0
votes
1
reply
200
views
Unevaluated error in ChIPQC combined with BiocParallel
BiocParallel ChIPQC
written 10 weeks ago by • 0
2
votes
1
reply
1.9k
views
DiffBind: Error in if (res$config$bCorPlot) { : the condition has length > 1
DiffBind ChIPQC
updated 2.3 years ago by ★ 5.2k • written 2.3 years ago by • 0
4
votes
13
replies
4.6k
views
BiocParallel error with ChIPQC
BiocManager ChIPQC RSamtools BiocParallel
updated 23 months ago by ★ 5.2k • written 2.5 years ago by • 0
0
votes
7
replies
2.3k
views
CHIPQC error regarding BiocParallel
CHIPQC Diffbind chipseq rory stark Thomas Carroll
updated 2.4 years ago by ▴ 40 • written 4.7 years ago by ▴ 10
1
vote
2
replies
1.2k
views
Could it be possible to get an older version of ChIPQC?
ChIPQC ChIP-seq DiffBind Rory_Stark
2.4 years ago etiennedanis • 0
0
votes
3
replies
1.1k
views
ChIPQC: Depths of coverage plot - Figure 1 of the ChIPQC report
ChIPQC
written 3.4 years ago by • 0
0
votes
1
reply
1.2k
views
saving png images and X11
ChipQC
updated 2.8 years ago by ★ 4.6k • written 2.8 years ago by ▴ 670
0
votes
0
replies
988
views
Generate a custom annotation for ChIPQC
ChIPQC
updated 2.8 years ago by 67k • written 2.8 years ago by • 0
0
votes
2
replies
1.1k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
2.9 years ago Bogdan ▴ 670
3
votes
6
replies
15k
views
Error: Faceting variables must have at least one value when plotting with ChIPQC
ChipQC chipqc
updated 2.2 years ago by • 0 • written 8.3 years ago by ▴ 10
0
votes
0
replies
657
views
ChIPQC: Theme
ChIPQC
3.4 years ago etiennedanis • 0
1
vote
2
replies
993
views
ChIPQC: log2 or log10?
ChIPQC
3.4 years ago etiennedanis • 0
3
votes
1
reply
1.2k
views
ChIPQC 'Contigs of interest are not all in Bam file!!' error
ChIPQC
3.6 years ago Jonah ▴ 20
0
votes
2
replies
1.4k
views
ChIPQC error in previously working code (BAM association error)
chipqc
updated 2.1 years ago by • 0 • written 3.7 years ago by ▴ 50
2
votes
3
replies
2.1k
views
ChipQC 'names' attribute [9] must be the same length as the vector [2]'
chipqc
updated 7 months ago by • 0 • written 4.2 years ago by ▴ 60
2
votes
7
replies
2.3k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 12 months ago by • 0 • written 4.3 years ago by • 0
0
votes
2
replies
1.6k
views
Error while running ChIPQC
ChIPQC
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by • 0
1
vote
3
replies
3.2k
views
Downsampling ChIP-seq BAM files with spike in normalization factor before feeding into Diffbind
diffbind chipseq chipqc
updated 4.1 years ago by ★ 5.2k • written 6.8 years ago by ▴ 10
0
votes
0
replies
1.4k
views
ChIPQC BiocParallel problems and how to select the "PeakCaller" for broad histone modification
ChIPQC
4.2 years ago lida • 0
0
votes
0
replies
874
views
ChIPQC cross-coverage plot
chipqc chip-seq
4.7 years ago tuteja.reetu • 0
0
votes
0
replies
756
views
Missing some plots and columns in my ChIPQC report
ChIPQC BioConductor
4.8 years ago mudithekanayake • 0
0
votes
1
reply
930
views
ChIPQC produces empty cross correlation plot
chipqc cross correlation
4.9 years ago nikhil.ashok.joshi • 0
0
votes
1
reply
1.1k
views
ChIPQC: Error in summary.factor
ChIPQC
updated 5.1 years ago by • 0 • written 5.2 years ago by • 0
0
votes
0
replies
870
views
ChIPQC makes a neverending loop while using all chromosomes
chipqc chipseq ChIPQC
5.3 years ago laura.mannarino ▴ 20
1
vote
1
reply
1.3k
views
ChIPQC: issues with report generation and QC metrics
ChIPQC software error
5.3 years ago ryleehackley • 0
2
votes
2
replies
1.6k
views
ChIPQC gives Bam file has 297 contigs Error: subscript contains out-of-bounds indices
ChIP-seq ChIPQC QC
updated 5.4 years ago by ▴ 20 • written 5.8 years ago by ▴ 10
3
votes
6
replies
2.1k
views
Integer overflow issue with ChIPQC
ChIPQC Rstudio
updated 5.4 years ago by 25k • written 5.4 years ago by ▴ 30
0
votes
1
reply
1.6k
views
ChIPQC BiocParallel errors
ChIPQC ChIPQC error BiocParallel
5.5 years ago minervajunjun • 0
2
votes
4
replies
3.4k
views
ChIPQC error: "names' attribute [9] must be the same length as the vector [7]"
ChIPQC
updated 3.4 years ago by • 0 • written 5.5 years ago by ▴ 20
0
votes
1
reply
1.3k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 3.6 years ago by • 0 • written 5.6 years ago by • 0
0
votes
1
reply
997
views
ChIPQC error: NCList object is too deep
ChIPQC
updated 5.9 years ago by ▴ 420 • written 5.9 years ago by • 0
0
votes
4
replies
2.1k
views
ATAC-Seq peaks quality control with ChIPQC package, but getting error
ATAC-Seq ChIPQC
updated 5.9 years ago by 67k • written 5.9 years ago by ▴ 10
0
votes
6
replies
1.7k
views
ChiPQC: 1Error in 1:(2 * readlength(object)) : NA/NaN argument
ChiPQC
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
0
votes
3
replies
1.5k
views
ChIPQC ERROR with "subscript out of bounds"
chipqc
6.0 years ago Chevy Xu • 0
2
votes
6
replies
2.5k
views
ChIPQC: error during annotation compilation
ChIPQC
updated 6.3 years ago by ▴ 420 • written 6.3 years ago by ▴ 10
3
votes
5
replies
2.9k
views
ChIPQC - can't read in bam files
chipqc chipqcreport
6.3 years ago molly_the_minotaur ▴ 30
0
votes
0
replies
916
views
ChIPQC Error in names(res) <- nms
chipqc
6.3 years ago gavrielmatt ▴ 30
1
vote
7
replies
3.2k
views
ChipQC not loading files
ChipQC diffbind
updated 6.3 years ago by ▴ 420 • written 6.4 years ago by • 0
0
votes
2
replies
1.2k
views
ChipQCreport coverage plot failure?
ChipQC chipqcreport
6.4 years ago tapio.envall • 0
0
votes
4
replies
2.5k
views
ChIPQC error: "non-zero exit status"
software error package installation chipqc txdb.hsapiens.ucsc.hg18.knowngene
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
votes
0
replies
1.3k
views
ChIPQC : ChIPQCreport : Error: Dimensions exceed 50 inches when saving plot with large sampleSheet
chipqc
6.8 years ago ZheFrench ▴ 60
0
votes
0
replies
1.2k
views
ChIPQC 0 unmapped does not agree with the samtool generated stats
ChIPQC
7.0 years ago ew152 • 0
0
votes
0
replies
1.3k
views
ChIPQC: Error in names(res) <- nms
ChIPQC chip-seq
7.1 years ago nbkingsley • 0
5
votes
11
replies
2.4k
views
ChIPQC Error in .Call2 NCList object is too deep
ChIPQC
updated 7.1 years ago by ▴ 420 • written 7.1 years ago by ▴ 10
0
votes
1
reply
1.7k
views
Can ChIPQC analyze mandarin duck ChIP-Seq data?
ChIPQC
updated 7.2 years ago by ▴ 420 • written 7.3 years ago by ▴ 20
0
votes
4
replies
1.9k
views
Unhelpful Errors Running ChIPQC on Computing Cluster
chipqc chipqcreport
7.3 years ago jared.andrews07 ▴ 30
0
votes
0
replies
999
views
ChIPQC stops at chr3 for calculating shift
chipqc
7.3 years ago psudyant • 0
2
votes
5
replies
2.1k
views
Diffbind: dba.plot retrieve variance explained
diffbind chipqc
updated 7.3 years ago by ★ 5.2k • written 7.3 years ago by ▴ 60
3
votes
12
replies
4.2k
views
ChIPQC failling when run ChIPQC() over 6 samples
chipqc
updated 7.3 years ago by ▴ 420 • written 9.8 years ago by • 0
0
votes
3
replies
1.5k
views
ChiPQC run time error
ChiPQC
updated 7.4 years ago by ▴ 420 • written 7.4 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
Awards • All
Popular Question to Ali Barry ▴ 40
Popular Question to gabriel.hoffman ▴ 170
Popular Question to Jenny Drnevich ★ 2.0k
Popular Question to martin.grigorov ▴ 10
Scholar to James W. MacDonald 67k
Locations • All
WEHI, Melbourne, Australia, 2 hours ago
30 N Gould St STE 39034 Sheridan, WY, 2 hours ago
Pakistan, 3 hours ago
Germany, 6 hours ago
Barcelona/Universitat Pompeu Fabra, 6 hours ago
Traffic: 452 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6