Showing : clusterProfiler • reset
3
votes
2
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14k
views
ENSEMBL to ENTREZ ID
clusterProfiler
3.4 years ago martacrespi7 ▴ 10
1
vote
1
reply
1.7k
views
Dotplot from enricher outputting very few genes
clusterProfiler enrichplot
updated 3.4 years ago by ★ 4.1k • written 3.4 years ago by ▴ 30
1
vote
3
replies
3.1k
views
enrichKEGG results for non-model organism
clusterProfiler enrichment KEGG
updated 21 months ago by • 0 • written 3.5 years ago by • 0
2
votes
1
reply
4.0k
views
TERM2NAME for enricher if I have list of GO IDs
clusterProfiler GO.db
3.5 years ago Lucía ▴ 30
0
votes
5
replies
3.6k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 3.5 years ago by 68k • written 3.5 years ago by ▴ 30
0
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0
replies
979
views
Not obtaining significant Gene Ontology Biological Process hits
clusterProfiler
3.5 years ago Jordan • 0
0
votes
13
replies
4.7k
views
EnrichGO not working with db created from annotationhub
clusterProfiler AnnotationHubData GO
updated 3.5 years ago by ★ 4.1k • written 3.5 years ago by ▴ 30
1
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2
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1.7k
views
cluster profiler
clusterProfiler
3.5 years ago michaelR • 0
1
vote
1
reply
1.0k
views
Meaning of brown-coloured nodes in the graph produced by the ReactomePA viewPathway() function.
clusterProfiler ReactomePA
updated 3.6 years ago by ▴ 780 • written 3.6 years ago by ▴ 20
2
votes
1
reply
3.6k
views
enrichKEGG
clusterProfiler enrichKEGG
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by • 0
1
vote
5
replies
3.7k
views
Use of clusterProfiler : Error in testForValidKeytype(x, keytype)
clusterProfiler r
updated 3.6 years ago by ★ 4.1k • written 3.6 years ago by • 0
0
votes
2
replies
6.4k
views
ClusterProfiler dotplot mapping fold change to colour of dots
clusterProfiler
updated 3.1 years ago by • 0 • written 3.6 years ago by • 0
0
votes
2
replies
2.4k
views
Plot terms with a NES < 0 GSEA results from gseGO
clusterProfiler
updated 3.6 years ago by ★ 1.2k • written 5.0 years ago by • 0
0
votes
1
reply
1.6k
views
Cluster Profiler output not the same as Enrichr output
enrichplot clusterProfiler
updated 3.6 years ago by • 0 • written 3.8 years ago by ▴ 10
5
votes
13
replies
6.6k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 3.7 years ago by ▴ 50 • written 3.7 years ago by • 0
0
votes
1
reply
3.4k
views
Filtering Clusterprofiler Result Object
clusterProfiler
updated 3.9 years ago by ★ 4.1k • written 3.9 years ago by ▴ 10
0
votes
1
reply
2.5k
views
Error in install package
clusterProfiler
updated 3.9 years ago by 4.2k • written 3.9 years ago by • 0
2
votes
11
replies
11k
views
ClusterProfiler enrichGO function leads to different enrichment results in different computers, while the code and gene list keep same
clusterProfiler
3.9 years ago liuzhy ▴ 10
0
votes
1
reply
1.4k
views
Not obtaining specified GO BPs in compareCluster dotplot
clusterProfiler
updated 3.9 years ago by ★ 4.1k • written 3.9 years ago by • 0
6
votes
4
replies
11k
views
what the test method for enrichGO in clusterProfiler?
clusterProfiler
3.9 years ago xiaofeiwang18266 ▴ 60
2
votes
1
reply
2.1k
views
How to keep cells square in heatplot function of enrichplot
clusterProfiler enrichplot heatplot
4.0 years ago fatimaruizdelabastida ▴ 10
1
vote
2
replies
5.2k
views
cnetplot with enrichKEGG results
clusterProfiler enrichKEGG cnetplot
4.0 years ago fatimaruizdelabastida ▴ 10
0
votes
5
replies
14k
views
Cannot install clusterProfiler
clusterprofiler biocinstaller
updated 4.0 years ago by ▴ 10 • written 7.5 years ago by • 0
0
votes
2
replies
2.5k
views
Too many genes in GO term after enrichGO
clusterProfiler enrichGO clusterPro
4.0 years ago Question1 • 0
2
votes
2
replies
5.0k
views
Is it possible to coerce dataframe to enrichResult class in clusterProfiler?
clusterprofiler
updated 4.0 years ago by • 0 • written 9.0 years ago by ▴ 40
2
votes
2
replies
1.9k
views
Using clusterProfiler for depletion analysis
clusterProfiler enrichGO
4.0 years ago samsiljee • 0
3
votes
2
replies
5.1k
views
gseGO input list
clusterProfiler
4.1 years ago leakerb • 0
1
vote
0
replies
2.1k
views
GSEA using clusterProfiler with non-model organism.
clusterProfiler KEGG GeneSetEnrichment
4.1 years ago makrez ▴ 10
0
votes
2
replies
2.0k
views
Unable to open igraph.so even though the file is present.
enrichplot clusterProfiler R
4.1 years ago Adarsh • 0
0
votes
1
reply
3.5k
views
how to sort y-axis category of GO result
GO.db clusterProfiler dotplot barplot
4.1 years ago Yang • 0
1
vote
0
replies
2.0k
views
documentation on clusterProfiler output
clusterProfiler KEGG
4.1 years ago rafaela.perez ▴ 10
8
votes
9
replies
11k
views
Error: package or namespace load failed for ‘clusterProfiler’: object ‘get_fun_from_pkg’ is not exported by 'namespace:rvcheck'
get_fun_from_pkg clusterProfiler rvcheck
updated 3.9 years ago by • 0 • written 4.2 years ago by • 0
0
votes
1
reply
2.1k
views
enrichGO analysis
clusterProfiler
updated 4.2 years ago by ★ 4.1k • written 4.2 years ago by • 0
1
vote
4
replies
7.3k
views
Issues with scaling down enrichplot's dotplot and gseaplot2 plots
RNASeq clusterProfiler enrichplot
updated 3.6 years ago by • 0 • written 4.4 years ago by • 0
1
vote
2
replies
2.6k
views
Translating Solanum lycopersum gene IDs to ENTREZIDs for GO enrichment analysis using clusterProfiler
OrgDb Bioconductor AnnotationHub clusterProfiler
updated 4.5 years ago by ★ 4.1k • written 4.5 years ago by • 0
0
votes
1
reply
12k
views
"No genes can be mapped...." using enrichGO in clusterProfiler
R TAIR clusterProfiler enrichGO Arabidopsis
updated 4.6 years ago by ★ 4.1k • written 4.6 years ago by • 0
0
votes
0
replies
2.0k
views
Error: package or namespace load failed for ‘clusterProfiler’: object 'integer64' is not exported by 'namespace:bit64'
clusterProfiler
4.6 years ago 845133099 • 0
0
votes
6
replies
4.8k
views
clusterProfiler: different runs return different results for gse functions
clusterprofiler
updated 4.6 years ago by ▴ 10 • written 8.2 years ago by • 0
1
vote
2
replies
3.4k
views
ClusterProfiler KEGG Gene Set Enrichment Analysis
clusterProfiler KEGGGeneSetEnrichmentAnalysis
4.8 years ago iidaL • 0
3
votes
11
replies
7.6k
views
GO enrichment analysis on Solanum lycopersicum proteomics dataset (UniProt IDs)
clusterProfiler AnnotationHub GO uniprot
updated 21 months ago by ★ 4.1k • written 4.8 years ago by • 0
0
votes
2
replies
4.2k
views
gene set enrichment analysis with enrichKEGG (clusterProfiler) returns very few enriched pathways
clusterProfiler KEGG GSEA
4.8 years ago Emilia ▴ 40
2
votes
3
replies
2.7k
views
Gene Ontology Analysis of DE Genes
clusterProfiler AnnotationDbi OrgDb goseq
updated 4.8 years ago by 68k • written 4.8 years ago by ▴ 30
0
votes
1
reply
6.7k
views
Having error with clusterProfiler::bitr
clusterProfiler
updated 4.8 years ago by ★ 4.1k • written 4.8 years ago by • 0
0
votes
2
replies
3.7k
views
Error with package clusterProfiler: "Error in abs(stats) : non-numeric argument to mathematical function"
Bioconductor BIOCOND clusterProfiler
updated 3.4 years ago by • 0 • written 4.9 years ago by • 0
0
votes
0
replies
588
views
Unique K number set or all K number set?
clusterProfiler
4.9 years ago XM • 0
2
votes
4
replies
4.4k
views
I want to make a geneList for clusterProfiler analysis but I get "error in do.call( cbind lapply(x is.na )) variable names are limited to 10000 bytes"
clusterProfiler
5.0 years ago Emilia ▴ 40
0
votes
1
reply
1.9k
views
Cut down genes displayed on x axis from enrichPlot's heatplot() function
clusterProfiler GeneSetEnrichment enrichplot
updated 4.9 years ago by ▴ 40 • written 5.0 years ago by • 0
0
votes
0
replies
880
views
Clusterprofiler - best practise for missing ids
ReactomePA clusterProfiler GeneSetEnrichment
5.0 years ago paun_bio • 0
0
votes
1
reply
1.7k
views
No gene can be mapped in Cluster profiler
clusterProfiler
updated 5.0 years ago by ★ 4.1k • written 5.0 years ago by • 0
2
votes
2
replies
2.7k
views
clusterporfiler enrichGO plot
clusterprofiler gene ontology plot
updated 5.2 years ago by ▴ 50 • written 5.2 years ago by • 0
288 results • Page 3 of 6
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