Showing : clusterProfiler • reset
0
votes
2
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1.9k
views
Warning messages: gseaKEGG
clusterProfiler r Tutorial
updated 5.4 years ago by ★ 4.0k • written 5.5 years ago by ▴ 40
0
votes
3
replies
2.2k
views
Can I use compareCluster function to compare genes upregulated in various clusters of cells?
clusterProfiler bioconductor
updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 20
6
votes
11
replies
12k
views
Cluster profiler - KEGG analysis
clusterprofiler
5.6 years ago sunnykevin97 • 0
4
votes
1
reply
9.8k
views
Warning message as converting gene Symbol to ENTREZID
go clusterprofiler
updated 5.6 years ago by 68k • written 5.6 years ago by ▴ 40
1
vote
9
replies
4.2k
views
Dotplots for differential gene expression data ?
clusterprofiler
5.6 years ago sunnykevin97 • 0
1
vote
5
replies
1.9k
views
No enriched GO terms with 1000 more genes
clusterprofiler GO
5.6 years ago Ruixuan ▴ 10
0
votes
1
reply
1.3k
views
compareCluster error: On clusterProfiler DEGs enrichments analysis
clusterProfiler Bioconductor R DEGs
5.6 years ago tpm • 0
1
vote
1
reply
1.8k
views
clusterProfiler merge_result dotplot
clusterProfiler
updated 4.8 years ago by • 0 • written 5.7 years ago by ▴ 160
1
vote
2
replies
2.4k
views
Help installing clusterProfiler
clusterProfiler DO.db GO.db lazy load fail
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
0
votes
0
replies
1.4k
views
similarity coefficients used in emapplot {enrichplot} / gsePathway {ReactomePA} and simplify {clusterProfiler}
enrichplot ReactomePA clusterProfiler similarity coefficients emapplot
5.7 years ago jan.soderman • 0
3
votes
10
replies
17k
views
keytype not supported in clusterprofiler when it is ensembl IDs?
clusterProfiler enrichGO
updated 5.7 years ago by 68k • written 5.7 years ago by ▴ 30
2
votes
8
replies
3.0k
views
gene enrichment using enrichGO function throuth annotationHub orgDb
software error enrichGO annotationHub clusterProfiler Job
updated 5.7 years ago by 68k • written 5.7 years ago by • 0
3
votes
3
replies
7.7k
views
Genelist input for ClusterProfiler
R ClusterProfiler Enrichment Pathway
updated 2.6 years ago by ★ 4.1k • written 5.8 years ago by • 0
0
votes
8
replies
3.6k
views
Adding Enrichresults for creating plot
ReactomePA clusterProfiler
5.8 years ago felix.thaler • 0
0
votes
2
replies
12k
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
updated 2.8 years ago by • 0 • written 5.8 years ago by • 0
0
votes
1
reply
5.5k
views
How to modify label text size/line width in cnetplot (ReactomePA/clusterProfiler)
clusterProfiler ReactomePA
updated 5.8 years ago by ★ 1.2k • written 5.8 years ago by ▴ 10
0
votes
4
replies
3.6k
views
How to list all "..." parameters inside R function
ReactomePA clusterProfiler
updated 5.9 years ago by 68k • written 5.9 years ago by • 0
0
votes
2
replies
1.5k
views
ClusterProfiler: enrichResult table with genes that do not have GO-term
ClusterProfiler enrichGO
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
1
reply
3.0k
views
emapplot (enrichplot) with compareCluster object does not work
emapplot enrichplot clusterProfiler compareCluster
updated 6.0 years ago by ★ 4.1k • written 6.0 years ago by • 0
0
votes
1
reply
1.2k
views
KEGG updated database
clusterprofiler
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
2
votes
5
replies
3.4k
views
Visualization of Functional Enrichment Result with enrichplot: How to control label size?
clusterProfiler enrichplot cnetplot
written 6.0 years ago by ▴ 30
0
votes
4
replies
1.7k
views
When doing the GO gene enrichment analysis of Populus euphratica, Annotation types can be converted, but enrichment analysis cannot be performed!
clusterProfiler
updated 6.0 years ago by 68k • written 6.0 years ago by • 0
0
votes
1
reply
1.9k
views
Is it possible to run gseDO for mouse 'org.Mm.eg.db'
ClusterProfiler
6.3 years ago raianbio • 0
1
vote
4
replies
3.5k
views
clusterProfiler: BgRatio N value does not equal set gene universe size
clusterProfiler
updated 6.3 years ago by ★ 1.2k • written 6.3 years ago by • 0
0
votes
3
replies
2.3k
views
GO enrichment for non-model plant species
clusterProfiler GSEABase GMTfiles
6.5 years ago sandeep.amberkar18 ▴ 10
2
votes
2
replies
5.1k
views
ClusterProfiler GSEA with geneList
clusterProfiler GSEA geneList
updated 6.5 years ago by ▴ 80 • written 6.6 years ago by • 0
0
votes
0
replies
2.6k
views
Adjusting the size of the visual output from cluster profiler
clusterProfiler heatmap GOAnalysis
6.7 years ago anthony.nash ▴ 20
0
votes
3
replies
5.4k
views
kegg enrichment using clusterProfiler could not read KEGG Orthology IDs
clusterprofiler
updated 6.7 years ago by • 0 • written 7.0 years ago by • 0
0
votes
1
reply
2.8k
views
How to change font size in ClusterProfiler
clusterProfiler font size Tutorial
updated 6.7 years ago by 53k • written 6.7 years ago by ▴ 10
0
votes
0
replies
3.3k
views
Clusterprofiler error, No gene can be mapped
microarray clusterprofiler
6.8 years ago rm1238 • 0
0
votes
5
replies
3.3k
views
Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interoperate with clusterProfiler in its absence?
annotation go clusterProfiler org.Sc.sgd.db
6.9 years ago Malcolm Cook ★ 1.6k
3
votes
4
replies
5.1k
views
error in keytype performing "enrichGO" from clusterprofiler
clusterprofiler
updated 4.8 years ago by ▴ 20 • written 6.9 years ago by ▴ 10
0
votes
0
replies
1.7k
views
enrichplot packages - is there a way of dropping specific KEGG classes
enrichplot clusterProfiler enrichKEGG gseKEGG
6.9 years ago yurigorelik ▴ 10
1
vote
0
replies
1.5k
views
ClusterProfiler: what to show as dot size (GeneRatio vs Count)
clusterProfiler
7.0 years ago Sebastian Hesse ▴ 70
2
votes
1
reply
3.3k
views
Selection of terms in clusterProfiler, the inverse of dropGO
clusterProfiler r
7.0 years ago Sebastian Hesse ▴ 70
0
votes
3
replies
1.9k
views
gseaplot vertical line
clusterProfiler gsea
updated 7.0 years ago by 0 • written 7.2 years ago by • 0
1
vote
1
reply
5.0k
views
compareCluster on Mus musculus
clusterprofiler
7.1 years ago unamourdeswann ▴ 10
0
votes
2
replies
4.4k
views
[clusterprofiler] Transformation from ENSEMBL ID to entrez ID or Symbol got reduced number of genes
clusterprofiler
updated 7.1 years ago by 68k • written 7.1 years ago by • 0
1
vote
2
replies
2.2k
views
Error with untar2 that blocks the installation of GO.db on Windows (R 3.5, Bioc 3.8) for using clusterProfiler
go.db clusterprofiler
updated 7.2 years ago by 25k • written 7.2 years ago by ★ 1.1k
0
votes
1
reply
3.9k
views
Different results come from GO enrichment analysis with ENSEMBL ID and ENTREZID as keyTypes
clusterprofiler go enrichment functional enrichment
updated 7.2 years ago by ★ 1.2k • written 7.2 years ago by ▴ 20
2
votes
3
replies
6.0k
views
No gene set have size > 10 ...
clusterprofiler gene ontology
7.3 years ago anton.kratz ▴ 60
0
votes
0
replies
1.1k
views
ClusterProfiler: Input file from methylation data in GO Classification (groupGO)
clusterprofiler
7.3 years ago WF • 0
1
vote
2
replies
2.7k
views
How to select a specific onthology after runing enrichGO for all 3 onthology
enrichGO clusterprofiler
7.5 years ago MAP ▴ 10
4
votes
2
replies
9.6k
views
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
clusterprofiler enrichGO barplot dotplot
7.5 years ago MAP ▴ 10
0
votes
1
reply
2.6k
views
ClusterProfiler - enrichKEGG on specific pathways
kegg enrichkegg clusterprofiler
updated 2.2 years ago by • 0 • written 7.5 years ago by ▴ 40
0
votes
2
replies
6.4k
views
Understanding clusterprofiler enrichment results
clusterprofiler gene set enrichment analysis enricher sc-rnaseq
updated 7.5 years ago by ★ 1.2k • written 7.5 years ago by ▴ 30
0
votes
6
replies
5.5k
views
enrichMKEGG can not identify the species
clusterprofiler
updated 7.5 years ago by ★ 4.1k • written 7.5 years ago by • 0
0
votes
3
replies
3.2k
views
Error Installing Cluster Profiler
clusterprofiler installation problem
7.6 years ago heir_of_isildur88 • 0
0
votes
1
reply
2.0k
views
Remove highly similar terms from a GO gene set enrichment analysis
clusterProfiler gseGO gene ontology go semantic similarity gene set enrichment analysis
7.6 years ago jan.soderman • 0
0
votes
5
replies
7.6k
views
clusterProfiler: exclude pathways and add gene names to cnetplot
clusterprofiler pathway analysis pathways
updated 3.2 years ago by • 0 • written 7.7 years ago by ▴ 20
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