Showing : ggbio • reset
1
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5
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961
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how can I add a label for granges using the geom_rect ?
ggbio
18 months ago • updated 17 months ago 潘晓光 • 0
0
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1
reply
1.1k
views
ggbio axis in karyogram
ggbio
updated 20 months ago by • 0 • written 8.0 years ago by ▴ 40
0
votes
4
replies
3.4k
views
How to combine VCF-class and data.frame with annotations
GO annotate convert ggbio GO annotate convert ggbio
written 11.7 years ago by ▴ 70
1
vote
3
replies
1.6k
views
ggbio - change transcript label sizes
ggbio annotation
updated 2.1 years ago by ▴ 50 • written 4.7 years ago by ★ 3.9k
0
votes
7
replies
1.2k
views
Uniform window size for different genes
ggbio
2.3 years ago rbenel ▴ 40
0
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0
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636
views
Remove space on x-axis
ggbio
2.7 years ago sophieagger • 0
0
votes
2
replies
1.0k
views
Error in GenomeInfoDb:::makeNewSeqnames
GenomeInfoDb ggbio
3.3 years ago Konstantinos Yeles ▴ 80
18
votes
4
replies
1.7k
views
`ggbio` package can't be loaded
ggbio
3.4 years ago Batool ▴ 370
0
votes
2
replies
1.2k
views
ggbio autoplot() error "object of type 'symbol' is not subsettable"
ggbio
3.5 years ago Andrew • 0
0
votes
2
replies
759
views
Does biovizBase contain a genesymbol data set for other model organisms?
biovizBase ggbio
updated 4.1 years ago by 65k • written 4.1 years ago by ▴ 20
0
votes
2
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837
views
ggbio tracks not aligned when legend present in one track
ggbio
updated 4.5 years ago by ★ 11k • written 4.5 years ago by ▴ 740
0
votes
6
replies
2.4k
views
Error while attempting to forge BSgenome data package
bsgenome ggbio
updated 4.6 years ago by • 0 • written 9.6 years ago by • 0
12
votes
7
replies
4.4k
views
Plot ggplot2 and ggbio Images Together
ggplot2 ggbio cowplot
updated 4.8 years ago by ★ 1.5k • written 8.9 years ago by ▴ 370
0
votes
0
replies
872
views
ggbio error when following tutorial, ideogram not highlighted, genetrack not working
ggbio ideogram autoplot
5.4 years ago gpwhiz ▴ 10
0
votes
0
replies
890
views
Recommendation for visualizing ChIP-qPCR data?
R chip-seq histone chip-seq ggbio
5.4 years ago Ramiro Magno ▴ 100
1
vote
2
replies
1.6k
views
ggbio won't plot ideogram in R version 3.3.1, ggplot2 version 3.1.0
ggbio ggplot2
5.5 years ago t.fadason ▴ 10
0
votes
9
replies
2.9k
views
Featurecounts issue for counting exons: Not matching total counts mapped for specific gene
featurecounts Rsubread ggbio
updated 5.5 years ago by ★ 3.6k • written 5.5 years ago by ▴ 40
0
votes
0
replies
921
views
xlim not working with ggbio
ggbio
5.5 years ago marisa.e.miller • 0
1
vote
1
reply
1.0k
views
ggbio labels with ggrepeal on circos plot
ggbio r graphics
5.6 years ago franceschini.gianmarco • 0
2
votes
2
replies
985
views
aes label in ggbio_1.26.1 with ggplot2_3.0.0
ggbio ggplot2
5.7 years ago Lescai, Francesco ▴ 380
0
votes
2
replies
923
views
visualization of chromatin interaction networks
gviz ggbio karyotypeR
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 670
0
votes
0
replies
1.9k
views
ggbio Error: Don't know how to add o to a plot
software error ggbio ggplot2
5.9 years ago zhe ▴ 20
0
votes
0
replies
790
views
Circular plot of transcript models with ggbio.
ggbio
6.6 years ago Charles Plessy ▴ 180
0
votes
2
replies
1.6k
views
Cytoband information for rice
rice cytoband circlize ggbio ideogram
6.9 years ago • updated 6.8 years ago Didi ▴ 10
2
votes
5
replies
3.3k
views
Error in GenomeInfoDb:::getDanglingSeqlevels
ggbio
6.9 years ago Bogdan ▴ 670
0
votes
1
reply
3.3k
views
an error in ggbio: "Breaks and labels are different lengths"
ggbio ggplot2
7.1 years ago Bogdan ▴ 670
0
votes
1
reply
1.4k
views
In ggbio, plot transcripts from a TxDb with gene labels
ggbio
updated 7.2 years ago by ★ 11k • written 7.2 years ago by • 0
1
vote
4
replies
2.6k
views
Giemsa stain annotation/nomenclature for UCSC cytoband tracks
ucsc ucsctrack ggbio Gviz hg19
updated 7.2 years ago by ▴ 10 • written 7.2 years ago by ▴ 10
1
vote
3
replies
2.9k
views
Combining LD matrix plot with SNP and gene data with ggplot / ggbio tracks() function
ggplot2 ggbio plot tracks bioconductor
updated 7.3 years ago by ★ 11k • written 7.3 years ago by ▴ 10
2
votes
4
replies
1.3k
views
ggbio tracks () does not allow "call" class in the "main" slot of the function
ggbio ggplot2 call plot
updated 7.4 years ago by ★ 11k • written 7.4 years ago by ▴ 10
0
votes
2
replies
1.4k
views
tracks () function from ggbio does not allow italic expression in the title
ggbio ggplot2 title typography
7.7 years ago • updated 7.4 years ago oswaldo.lorenzo ▴ 10
0
votes
3
replies
1.5k
views
ggbio: integrate different plots
ggbio
updated 7.4 years ago by ★ 11k • written 7.4 years ago by • 0
0
votes
1
reply
1.3k
views
ggbio tracks issue
ggbio tracks
7.5 years ago longoka • 0
7
votes
9
replies
3.0k
views
Install ggbio development version
ggbio development package installation
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
1
vote
1
reply
1.2k
views
Add main title to ggbio's karyogram
ggbio karyogram granges
updated 7.6 years ago by ★ 11k • written 7.6 years ago by ▴ 80
0
votes
1
reply
2.1k
views
Missing levels in legend using autoplot () + scale_color_manual () functions
ggbio ggplot2 legend bioconductor karyiogram
7.7 years ago oswaldo.lorenzo ▴ 10
1
vote
1
reply
1.6k
views
How to show chromosome position and SNP label at the same time in x axis
ggbio ggplot2 genomics plot
7.7 years ago oswaldo.lorenzo ▴ 10
0
votes
1
reply
2.4k
views
Ideogram not alligned with ggbio and tracks()
ggbio ggplot2
updated 7.7 years ago by ▴ 10 • written 8.1 years ago by ▴ 10
0
votes
2
replies
1.2k
views
ggbio: untransformed coordinate when using `tracks` function with IRanges or numeric value as `xlim`
ggbio tracks
updated 7.7 years ago by ▴ 10 • written 7.7 years ago by ▴ 20
2
votes
3
replies
1.7k
views
ggbio tracks() function handling x axis in the wrong way
ggbio ggplot2 tracks genomics plot
7.7 years ago oswaldo.lorenzo ▴ 10
0
votes
0
replies
1.0k
views
Highlighting Significantly Associated Sites on Manhattan Plot using ggbio
ggbio manhattan plot plotGrandLinear
7.8 years ago graggsd • 0
0
votes
1
reply
1.2k
views
problem loading gwascat and ggbio
gwascat ggbio Mac
7.9 years ago jameshunterbr • 0
0
votes
0
replies
878
views
ggbio: axis in karyogram line graph overlay
ggbio
8.0 years ago map2085 ▴ 40
0
votes
0
replies
935
views
Cannot replicate VCF plot from help page
ggbio
8.0 years ago kevin.rue ▴ 350
0
votes
0
replies
1.0k
views
ggbio plotIdeogram(..., zoom.region) broken ?
ggbio biovizBase
8.0 years ago kevin.rue ▴ 350
0
votes
1
reply
1.3k
views
ggbio OrganismDb autoplot - reduce vs identity
ggbio autoplot
updated 8.0 years ago by 65k • written 8.0 years ago by ▴ 380
0
votes
2
replies
1.4k
views
Cannot replicate circle plot vignette output in ggbio devel
software error ggbio circle plot
updated 8.1 years ago by ★ 11k • written 8.1 years ago by ▴ 90
3
votes
2
replies
1.7k
views
Cannot use color/ fill arguments outside of aes() in ggbio karyogram layout
ggbio
8.2 years ago Mario Saare ▴ 20
0
votes
2
replies
1.2k
views
puzzling ggbio behaviour when plotting a detail of a track
ggbio
updated 8.3 years ago by 65k • written 8.3 years ago by ▴ 160
2
votes
3
replies
2.3k
views
No color support in ggbio for autoplot
ggbio autoplot color vignette
updated 8.3 years ago by ▴ 10 • written 8.3 years ago by • 0
50 results • Page 1 of 1
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Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Well, if I look at genes with baseMean>50, then the relative absolute difference in log2FoldChange (say over the absolute log2FoldChange of…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
Thank you for advice, you mean I need to add: countdata_rat <- data.frame(condition = as.factor(METADATA_RAT$treatment)) and total: dds_…
Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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