Showing : heatmaps • reset
2
votes
5
replies
1.3k
views
Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 4 months ago by ▴ 110 • written 5 months ago by ▴ 10
1
vote
5
replies
1.3k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 5 months ago by 68k • written 5 months ago by ▴ 10
0
votes
2
replies
884
views
DESeq2 Heatmap
heatmaps
updated 9 months ago by ★ 1.4k • written 9 months ago by • 0
0
votes
3
replies
1.6k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 12 months ago by 68k • written 12 months ago by ▴ 50
1
vote
5
replies
2.2k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 14 months ago by • 0
2
votes
1
reply
1.5k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 14 months ago by ★ 5.0k • written 14 months ago by • 0
0
votes
0
replies
445
views
Error in drawHeatmap function
GeneOverlap heatmaps
16 months ago Johanna • 0
0
votes
2
replies
1.2k
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 17 months ago by 68k • written 17 months ago by • 0
0
votes
1
reply
2.5k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 23 months ago by ▴ 780 • written 24 months ago by • 0
0
votes
1
reply
2.6k
views
edgeR heatmap construction and interpretation
heatmaps
updated 2.0 years ago by 53k • written 2.0 years ago by • 0
0
votes
3
replies
1.3k
views
Installing Gpart
gpart heat heatmaps
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
votes
2
replies
1.2k
views
Drawing a heatmap with only limited genes
heatmaps
updated 2.3 years ago by • 0 • written 2.3 years ago by • 0
1
vote
1
reply
900
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.5 years ago by ▴ 90 • written 2.6 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
votes
2
replies
1.8k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.6 years ago shuangshuang • 0
0
votes
0
replies
1.5k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.7 years ago gianni.drm • 0
0
votes
1
reply
1.3k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by ▴ 10
2
votes
3
replies
1.9k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by ▴ 10
2
votes
2
replies
1.2k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.7 years ago Sooni ▴ 10
4
votes
5
replies
6.4k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.7 years ago by 53k • written 2.8 years ago by ▴ 10
2
votes
5
replies
2.7k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.8 years ago Katharina • 0
0
votes
1
reply
4.3k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
0
votes
3
replies
2.2k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
0
votes
1
reply
2.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 3.1 years ago by ▴ 290 • written 3.2 years ago by • 0
1
vote
1
reply
1.6k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
0
votes
2
replies
8.2k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.3 years ago Bhavana • 0
0
votes
3
replies
2.0k
views
Persisting error in making a heatmap
heatmaps gplots
3.3 years ago beslinail • 0
1
vote
1
reply
1.3k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
1
reply
1.6k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 4.1 years ago by ▴ 40 • written 4.1 years ago by • 0
0
votes
2
replies
2.3k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.3 years ago Clara ▴ 10
0
votes
1
reply
3.5k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 10
1
vote
1
reply
1.3k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 30
4
votes
5
replies
2.0k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
0
replies
1.0k
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 10
34 results • Page 1 of 1
Recent ...
Replies
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Comment: NA values for DESeq2 p-values and adjusted p-values using large sample sizes by Gabriel • 0
Thank you very much for the reply. However, none of these three options seems to fit: 1) The genes for which NA appears do not have all 0 …
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Steve Lianoglou ★ 13k
Popular Question to abaed • 0
Popular Question to ubjw24 • 0
Popular Question to Hervé Pagès 16k
Locations • All
The city by the bay, 30 minutes ago
United States, 1 hour ago
United States, 2 hours ago
Barcelona, Spain, 2 hours ago
United States, 5 hours ago
Traffic: 459 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6