Showing : heatmaps • reset
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DESeq2 Heatmap
heatmaps
updated 9 weeks ago by ★ 1.4k • written 9 weeks ago by • 0
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3
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800
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Label specific rows in pheatmap
heatmaps pheatmap
updated 5 months ago by 68k • written 5 months ago by ▴ 50
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5
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1.6k
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Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 7 months ago by • 0
2
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1.0k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 7 months ago by ★ 4.7k • written 7 months ago by • 0
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298
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Error in drawHeatmap function
GeneOverlap heatmaps
9 months ago Johanna • 0
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2
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930
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 10 months ago by 68k • written 10 months ago by • 0
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2.0k
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Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 17 months ago by ▴ 780 • written 17 months ago by • 0
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2.2k
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edgeR heatmap construction and interpretation
heatmaps
updated 17 months ago by 52k • written 17 months ago by • 0
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3
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1.1k
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Installing Gpart
gpart heat heatmaps
updated 17 months ago by 68k • written 17 months ago by • 0
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1.1k
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Drawing a heatmap with only limited genes
heatmaps
updated 21 months ago by • 0 • written 21 months ago by • 0
1
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763
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Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 23 months ago by ▴ 80 • written 2.0 years ago by ▴ 10
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969
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.0 years ago by ★ 4.7k • written 2.1 years ago by • 0
0
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2
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1.5k
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How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.1 years ago shuangshuang • 0
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1.3k
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WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.1 years ago gianni.drm • 0
0
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1
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1.0k
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struggling to create a heatmap
DESeq2 heatmaps
updated 2.1 years ago by ★ 4.7k • written 2.1 years ago by ▴ 10
2
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3
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1.6k
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How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.2 years ago by ▴ 40 • written 2.2 years ago by ▴ 10
2
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2
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993
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[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.2 years ago Sooni ▴ 10
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5
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5.6k
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How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.1 years ago by 52k • written 2.2 years ago by ▴ 10
2
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5
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2.3k
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ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.3 years ago Katharina • 0
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3.8k
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Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 2.4 years ago by 43k • written 2.5 years ago by • 0
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3
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1.9k
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Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
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2.2k
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Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 2.6 years ago by ▴ 290 • written 2.6 years ago by • 0
1
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1.4k
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How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
0
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6.8k
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Scaling for p.heatmap
heatmaps pheatmap scaling
2.8 years ago • updated 2.7 years ago Bhavana • 0
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3
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1.7k
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Persisting error in making a heatmap
heatmaps gplots
2.8 years ago beslinail • 0
1
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1
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1.1k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 2.9 years ago by 68k • written 2.9 years ago by • 0
0
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1
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1.5k
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Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.6 years ago by ▴ 40 • written 3.6 years ago by • 0
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2.1k
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PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
3.8 years ago Clara ▴ 10
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3.2k
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Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by ▴ 10
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1
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1.1k
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PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.1 years ago by 43k • written 4.1 years ago by ▴ 30
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DEseq2 results
heatmaps DEGs PCA
updated 4.1 years ago by ★ 4.0k • written 4.1 years ago by • 0
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917
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How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.1 years ago by 68k • written 6.1 years ago by ▴ 10
32 results • Page 1 of 1
Recent ...
Replies
Comment: pairedGSEA input files by shdam ▴ 10
Hi Sara, Apologies for the slow response! James is exactly right. Both `salmon` and `kallisto` can produce transcript counts, if you map …
Comment: Unused arguments error without used arguments in GSVA? by michaelarringtony • 0
Perhaps from a direct call to gsva without the parameter [Sprunki Pyramixed][1] object [1]: https://pyramixed.io/
Comment: EdgeR Biological CVs by jeffreestary • 0
By default, edgeR uses an empirical Bayes approach to shrink gene-wise dispersions toward a trended or [PolyTrack][1] common value, which i…
Comment: How to reverse complement some elements of a DNAStringSet by shrill.asp.tufl • 0
Dealing with DNAStringSet manipulation can be tricky! When selectively reverse complementing sequences, consider how to efficiently retain …
Comment: Ensembl site unresponsive via biomaRt by mdeea123 ▴ 10
I am also having issues using BioMart to run code that has worked before. The problem first occurred last week. As I have encountered these…
Votes
Answer: Is there any chance to solve "the model matrix is not full rank" in DESeq2?
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
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