Showing : heatmaps • reset
2
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5
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1.3k
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Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 6 months ago by ▴ 110 • written 6 months ago by ▴ 10
1
vote
5
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1.5k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 7 months ago by 68k • written 7 months ago by ▴ 10
0
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2
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955
views
DESeq2 Heatmap
heatmaps
updated 11 months ago by ★ 1.4k • written 11 months ago by • 0
0
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3
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1.7k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 14 months ago by 68k • written 14 months ago by ▴ 50
1
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5
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2.3k
views
Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 16 months ago by • 0
2
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1
reply
1.6k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 16 months ago by ★ 5.0k • written 16 months ago by • 0
0
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0
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517
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Error in drawHeatmap function
GeneOverlap heatmaps
18 months ago Johanna • 0
0
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2
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1.3k
views
Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 18 months ago by 68k • written 18 months ago by • 0
0
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1
reply
2.6k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
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1
reply
2.7k
views
edgeR heatmap construction and interpretation
heatmaps
updated 2.2 years ago by 53k • written 2.2 years ago by • 0
0
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3
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1.5k
views
Installing Gpart
gpart heat heatmaps
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
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2
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1.3k
views
Drawing a heatmap with only limited genes
heatmaps
updated 2.5 years ago by • 0 • written 2.5 years ago by • 0
1
vote
1
reply
964
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.7 years ago by ▴ 90 • written 2.7 years ago by ▴ 10
0
votes
1
reply
1.2k
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.8 years ago by ★ 5.0k • written 2.8 years ago by • 0
0
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2
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1.9k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.8 years ago shuangshuang • 0
0
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0
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1.6k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.8 years ago gianni.drm • 0
0
votes
1
reply
1.3k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.9 years ago by ★ 5.0k • written 2.9 years ago by ▴ 10
2
votes
3
replies
2.0k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.9 years ago by ▴ 40 • written 2.9 years ago by ▴ 10
2
votes
2
replies
1.2k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.9 years ago Sooni ▴ 10
4
votes
5
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6.5k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.8 years ago by 53k • written 3.0 years ago by ▴ 10
2
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5
replies
2.8k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
3.0 years ago Katharina • 0
0
votes
1
reply
4.3k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.2 years ago by 43k • written 3.2 years ago by • 0
0
votes
3
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2.3k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 3.2 years ago by 68k • written 3.2 years ago by • 0
0
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1
reply
2.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 3.3 years ago by ▴ 290 • written 3.3 years ago by • 0
1
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1
reply
1.6k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
votes
2
replies
8.5k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.5 years ago Bhavana • 0
0
votes
3
replies
2.1k
views
Persisting error in making a heatmap
heatmaps gplots
3.5 years ago beslinail • 0
1
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1
reply
1.3k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
0
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1
reply
1.7k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 4.3 years ago by ▴ 40 • written 4.3 years ago by • 0
0
votes
2
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2.4k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.5 years ago Clara ▴ 10
0
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1
reply
3.6k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
1
vote
1
reply
1.4k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 30
4
votes
5
replies
2.1k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
0
votes
0
replies
1.1k
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.8 years ago by 68k • written 6.8 years ago by ▴ 10
34 results • Page 1 of 1
Recent ...
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Comment: Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCP by TikTsoksocissalpc • 0
Normalizing complex datasets like Hi C can be challenging, much like setting up a PC for optimal gaming performance. Just as careful tuning…
Comment: p.adjust BH Question by TikTsoksocissalpc • 0
Thanks for sharing your question about RMA limma analysis While working on your experiment, it s always helpful to have some background mu…
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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