Showing : heatmaps • reset
2
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5
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1.3k
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Heatmap of rnaseq data with z-score scale
heatmaps RNASeq
updated 5 months ago by ▴ 110 • written 5 months ago by ▴ 10
1
vote
5
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1.3k
views
Heatmap of a transformed deseq object with pheatmap
DESeq2 heatmaps
updated 5 months ago by 68k • written 5 months ago by ▴ 10
0
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2
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887
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DESeq2 Heatmap
heatmaps
updated 9 months ago by ★ 1.4k • written 9 months ago by • 0
0
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3
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1.6k
views
Label specific rows in pheatmap
heatmaps pheatmap
updated 12 months ago by 68k • written 12 months ago by ▴ 50
1
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5
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2.2k
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Heatmap from the output of GSEA clusterProfiler?
clusterProfiler heatmaps
written 14 months ago by • 0
2
votes
1
reply
1.5k
views
DESeq2 is it OK to scale transformed data in order to plot heatmaps?
DESeq2 heatmaps
updated 14 months ago by ★ 5.0k • written 14 months ago by • 0
0
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0
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446
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Error in drawHeatmap function
GeneOverlap heatmaps
16 months ago Johanna • 0
0
votes
2
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1.2k
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Cluster columns in Pheatmap
geneexp pheatmap heatmaps cluster
updated 17 months ago by 68k • written 17 months ago by • 0
0
votes
1
reply
2.5k
views
Error when trying to create a heatmap with DESeq2
Heatmap RNA-seqanalysis heatmaps DESeq2
updated 24 months ago by ▴ 780 • written 24 months ago by • 0
0
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1
reply
2.6k
views
edgeR heatmap construction and interpretation
heatmaps
updated 2.0 years ago by 53k • written 2.0 years ago by • 0
0
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3
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1.3k
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Installing Gpart
gpart heat heatmaps
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
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2
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1.2k
views
Drawing a heatmap with only limited genes
heatmaps
updated 2.3 years ago by • 0 • written 2.3 years ago by • 0
1
vote
1
reply
903
views
Add 'ColSideColors' using 'heatmap.2' function
ColSideColors heatmaps heatmap.2
updated 2.5 years ago by ▴ 90 • written 2.6 years ago by ▴ 10
0
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1
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1.1k
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 2.6 years ago by ★ 5.0k • written 2.6 years ago by • 0
0
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2
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1.8k
views
How to use the plotExprHeatmap function to draw heat maps according to groups
grou heatmaps CyTOFpower cytofWorkflow
2.6 years ago shuangshuang • 0
0
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0
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1.5k
views
WGCNA Heatmap and Export to Cytoscape Not Working
Cytoscape Heatmap heatmaps WGCNA
2.7 years ago gianni.drm • 0
0
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1
reply
1.3k
views
struggling to create a heatmap
DESeq2 heatmaps
updated 2.7 years ago by ★ 5.0k • written 2.7 years ago by ▴ 10
2
votes
3
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1.9k
views
How can I draw a barplot of complexheatmap according 'Tumor Type'
heatma heatmaps ComplexHeatmap
updated 2.7 years ago by ▴ 40 • written 2.7 years ago by ▴ 10
2
votes
2
replies
1.2k
views
[DESeq2] There is no difference in expression in my heatmap
DESeq2 heatmaps
2.7 years ago Sooni ▴ 10
4
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5
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6.4k
views
How to identify top most variable genes from log2 normalized data?
supervised edgeR variance RNASeq heatmaps
updated 2.7 years ago by 53k • written 2.8 years ago by ▴ 10
2
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5
replies
2.7k
views
ComplexHeatmap - z-score color coding failed
heatmaps ComplexHeatmap
2.9 years ago Katharina • 0
0
votes
1
reply
4.3k
views
Heatmap with result DESeq analysis
DESeq2 results Heatmaps plots
updated 3.0 years ago by 43k • written 3.0 years ago by • 0
0
votes
3
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2.2k
views
Generate Heatmap from Gene Names after DESEQ2
DESeq2 DESEQ2 tximeta SummarizedExperiment heatmaps
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
0
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1
reply
2.5k
views
Complex Heatmap - correlation matrix - how to have exact same annotation with same colors for rows and columns?
R heatmaps ComplexHeatmap Heatma
updated 3.1 years ago by ▴ 290 • written 3.2 years ago by • 0
1
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1
reply
1.6k
views
How fix lines of dendrogram that overlap in the column portion of a heatmap?
heat heatmaps
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
0
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2
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8.2k
views
Scaling for p.heatmap
heatmaps pheatmap scaling
3.3 years ago Bhavana • 0
0
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3
replies
2.0k
views
Persisting error in making a heatmap
heatmaps gplots
3.3 years ago beslinail • 0
1
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1
reply
1.3k
views
Method for generating heatmap of overlapping DEGs?
heatm heatmaps
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
0
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1
reply
1.6k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 4.1 years ago by ▴ 40 • written 4.1 years ago by • 0
0
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2
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2.4k
views
PCA and heatmaps: most variable genes selection
DESeq2 ExpressionData heatmaps pca
4.3 years ago Clara ▴ 10
0
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1
reply
3.5k
views
Can you colour dendrogram branch clusters in pheatmap?
R heatmaps pheatmap
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 10
1
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1
reply
1.3k
views
PCA rand heatmap of raw data
DESeq2 DiffSeq PrincipalComponent rlog heatmaps
updated 4.6 years ago by 43k • written 4.6 years ago by ▴ 30
4
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5
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2.0k
views
DEseq2 results
heatmaps DEGs PCA
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
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0
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1.0k
views
How to generate input file for Bioconductor package heatmaps
heatmaps input file
updated 6.6 years ago by 68k • written 6.6 years ago by ▴ 10
34 results • Page 1 of 1
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by James W. MacDonald 68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in by dan.gatti • 0
Was anyone else able to put the pieces together using the reply above? I read in one 10X sample using DropletUtils::read10xCounts() and thi…
Comment: Announcing GBCC 2025: The first-ever joint conference between Bioconductor and G by dzv20413 • 0
Wow, GBCC 2025 sounds amazing, can not wait to see the logo contest results! Also, I just played [Level Devil][1] and it is super addictive…
Comment: Memory error while running alignments by Erik Wright ▴ 150
How much memory is available on the computer? A distance matrix of 50k sequences requires at least 50k*50k/2 * 8 bytes = 10GB, assuming the…
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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