Showing : microarray • reset
1
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754
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affy::rma results doesn't match with ncbi website
affy Preprocessing Microarray
updated 11 months ago by 68k • written 11 months ago by • 0
0
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1
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734
views
WGCNA sample-data preprocessing order
Microarray WGCNA GeneExpression
updated 12 months ago by ★ 5.0k • written 12 months ago by • 0
1
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8
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2.9k
views
Combining RNAseq and microarray data using edgeR/limma-voom
limma voom RNASeq edgeR Microarray
written 15 months ago by • 0
0
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2
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1.5k
views
Probe off-target prediction: Identifying short sequence matches - potentially with mismatches & indels - in a transcriptome
Microarray Alignment Biostrings
written 2.8 years ago by ▴ 70
1
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2
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1.9k
views
Filter by expression and keep probes in limma
R filter limma Normalization Microarray
2.8 years ago Abdul ▴ 20
2
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2
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1.3k
views
Question about transforming log expression values to antilog values in limma
IlluminaChip limma AffymetrixChip Normalization Microarray
2.8 years ago Abdul ▴ 20
0
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2
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1.4k
views
Full list of differential genes not obtained in topTable
Microarray GEOquery topTable limma
updated 2.9 years ago by 53k • written 2.9 years ago by • 0
2
votes
2
replies
1.5k
views
Question about avereps function of limma
avereps probes average limma Microarray
updated 2.9 years ago by 53k • written 2.9 years ago by ▴ 10
0
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0
replies
1.2k
views
Aligning Clariom D against reference Genome and transcriptome pipeline
Clariom Align MicroarrayData Alignment Microarray
3.0 years ago agamemnon • 0
0
votes
1
reply
1.2k
views
Micro Array GEO data analysis
GEOquery MicroarrayData Normalization Microarray NanoStringDiff
updated 3.0 years ago by 68k • written 3.0 years ago by • 0
0
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2
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1.9k
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Remove batch effect between microarray data
Microarray DifferentialExpression limma MicroarrayData removebatcheffect
3.1 years ago dqt • 0
0
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2
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1.2k
views
Celfiles not reading in
Microarray
written 3.1 years ago by • 0
6
votes
6
replies
2.3k
views
Too many differentially expressed miRNA with limma
limma miRNA Microarray
3.2 years ago Sara ▴ 20
1
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4
replies
6.4k
views
How to process Nimblegen microarray .pair files to get normalized expression matrix
Microarray Preprocessing NimbleGen Normalization
written 3.2 years ago by • 0
0
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17
replies
4.7k
views
Advice for the analysis of microarray data with limma
Microarray MicroarrayData limma
updated 3.0 years ago by 53k • written 3.3 years ago by • 0
0
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1
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1.3k
views
Compare different cell lines with tissues using limma
limma MicroarrayData Microarray Agilent
updated 3.6 years ago by 53k • written 3.6 years ago by • 0
0
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8
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2.3k
views
Finding differentially expressed genes in a prospective cohort study
limma MicroarrayData Microarray
3.6 years ago YC • 0
0
votes
4
replies
1.7k
views
Thoughts on how to model gene expression data from two groups in a clinical trial
Microarray DifferentialExpression
3.7 years ago S • 0
1
vote
2
replies
1.4k
views
Problem with results of Differential expression in Affymetrix microarray
limma MicroarrayData Microarray Affymetrix
3.7 years ago Mikołaj Mierzejewski • 0
1
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2
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2.0k
views
Affymetrix analysis of microarray by using Limma
limma MicroarrayData Microarray Affymetrix
3.7 years ago Mikołaj Mierzejewski • 0
4
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10
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3.1k
views
Methods for removing unexpressed probes of Affymetrix Human Genome U219 Array
pd.hg.u219 Microarray oligo AffymetrixChip
3.7 years ago Yang Shi ▴ 10
3
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4
replies
3.0k
views
Quantile Normalization after rma or not?
limma Microarray oligo
3.7 years ago Yang Shi ▴ 10
2
votes
2
replies
1.4k
views
Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0
hta20transcriptcluster.db Microarray oligo
3.7 years ago Yang Shi ▴ 10
2
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5
replies
4.2k
views
Get corresponding gene id for probe id from Affymetrix array
AnnotationDbi Microarray
3.8 years ago nhaus ▴ 70
0
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2
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1.4k
views
Identifying multiple mappings with pd.clariom.d.human
clariomdhumantranscriptcluster.db MicroarrayData Microarray pd.clariom.d.human
3.8 years ago amir.rakhimov.b • 0
1
vote
2
replies
2.4k
views
Time course experiment using limma
limma Multi-levelExperiments Microarray
3.8 years ago Wendy ▴ 10
0
votes
12
replies
2.5k
views
Annotating featureData to an affymetrix Xcel microarray
Microarray
3.8 years ago Adam • 0
0
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0
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1.1k
views
Error in svd(X) when using edge lrt (or odp) function.
edge Microarray longitudinal
3.9 years ago emily • 0
2
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5
replies
2.9k
views
Adjust for base line gene expression in limma model
limma Microarray
updated 4.1 years ago by 53k • written 4.2 years ago by • 0
4
votes
6
replies
2.2k
views
RMA on different disease labels
rma background microarray normalization
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
1
vote
1
reply
1.9k
views
Extracting a list of genes from the Gene Expression Omnibus with Geoquery.
Microarray GEOquery cancerdata MicroarrayData
updated 4.4 years ago by 68k • written 4.4 years ago by ▴ 50
5
votes
2
replies
3.7k
views
Query regarding the use of eBayes + topTable and treat + topTreat
Microarray limma DifferentialExpression
updated 3.5 years ago by 53k • written 4.5 years ago by ▴ 10
0
votes
1
reply
1.8k
views
Re-normalize microarray dataset in R
microarray quantile expression R Normalization
updated 4.6 years ago by ▴ 90 • written 4.6 years ago by ▴ 10
3
votes
5
replies
2.6k
views
Use of arrayWeights with two treatment groups
Microarray arrays limma MicroarrayData
updated 4.6 years ago by 53k • written 4.7 years ago by • 0
1
vote
1
reply
2.2k
views
How do I adjust for other factors in Limma differential expression analysis?
limma Microarray MicroarrayData arrays
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by • 0
1
vote
2
replies
2.3k
views
RUV4 for microarrays
RUV4 RUV Microarray
4.8 years ago Antonio • 0
0
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2
replies
2.9k
views
How to exclude outlier (Microarray ) from PCA in R
OutlierD pcaMethods MicroarrayData Microarray
4.8 years ago waiyin0923 • 0
0
votes
1
reply
1.4k
views
Microarray: Build annotation for HT MG430PM affymetrix
AffymetrixChip Microarray affymetrix
updated 4.8 years ago by ★ 4.1k • written 4.8 years ago by • 0
1
vote
2
replies
2.3k
views
How to quantile normalize arraystar lncRNA microarray data?
limma Microarray
4.9 years ago • updated 4.8 years ago a.deb • 0
3
votes
3
replies
2.0k
views
Weird MAplot with DEGs lying along the diagonals
limma Microarray AgilentChip MA-plot Normalization
4.9 years ago FedeXandeR • 0
0
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2
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2.5k
views
WGCNA - Outliers after creating sample tree
MicroarrayData WGCNA Microarray
5.0 years ago jpwl2 • 0
9
votes
4
replies
2.0k
views
Limma outputs different results for same sample?
topTable MicroarrayData ebayes limma Microarray
5.0 years ago snijesh ▴ 200
1
vote
2
replies
2.0k
views
How to do limma on 3 factors with multiple levels (e.g 3-way anova) on microarray log values
interactions 3factors limma Microarray
5.0 years ago Dan ▴ 20
3
votes
9
replies
2.3k
views
limma analysis when only Cy5 was used
MicroarrayData limma Microarray
5.0 years ago Daniel.Schnell • 0
0
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0
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1.8k
views
how to find consensus modules between 2 datasets by different platform through WGCNA
consensusmodule microarray RNA-seq WGCNA
5.3 years ago modarzi ▴ 10
1
vote
3
replies
3.6k
views
Annotating [HuGene-1_0-st] Affymetrix Human Gene 1.0 ST Array [transcript (gene) version] file
microarray annotation affy
5.3 years ago kiera.lee ▴ 10
4
votes
7
replies
2.2k
views
Limma sample groups
microarray limma affy cancer
updated 5.4 years ago by 53k • written 5.4 years ago by • 0
0
votes
2
replies
1.8k
views
Regarding ArrayExpress package
microarray arrayexpress
updated 5.4 years ago by 68k • written 5.4 years ago by • 0
0
votes
2
replies
1.7k
views
What is the best way to do annotation of the transcript clusters and filter in HTA 2.0
HTA2.0 microarray affy r
5.4 years ago Marco_aurelio • 0
1
vote
6
replies
3.3k
views
can negative value microarray matrix data analysed by limma directly
limma microarray normalization
updated 2.5 years ago by 53k • written 5.4 years ago by ▴ 20
2,319 results • Page 1 of 47
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Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you so much for your help! will try to proceed with the suggestion
Comment: GSEA in R/Bioconductor course by a2a2haa • 0
Academic researchers often share their breakthroughs and course updates through visual stories, making it essential to have tools that pres…
Comment: Bulk RNAseq analysis for by Mariami • 0
Thank you for the explanation. I understand, although at the moment we are limited in our ability to increase N. My concern came from the o…
Answer: Bulk RNAseq analysis for by Gordon Smyth 53k
All three packages allow paired comparisons, where the clone is the "pair". limma moreover allows mixed models (just run `voomLmFit` with `…
Comment: Announcing a New Journal - Bioinformatics Methods and Applications - Now Open fo by a2a2haa • 0
By promoting reproducible analysis, the scientific community can better understand the precise mechanisms that make [Hydrogen inhalation sa…
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Comment: Are transformed values from rlog /vst log2 normalized counts?
Are transformed values from rlog /vst log2 normalized counts?
Answer: Bulk RNAseq analysis for
Answer: DiffBind differential analysis
Answer: Limma-voom sample weights and impact on DEG numbers
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