Showing : microarray • reset
1
vote
1
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982
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How to use &gt in R
microarray normalization
10.3 years ago shaheryar • 0
1
vote
1
reply
2.6k
views
Perplexing results with Limma with RNA-seq data
sequencing microarray
updated 10.3 years ago by ★ 13k • written 10.3 years ago by ▴ 420
1
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2
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2.1k
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How to handle the problem of one probe set ID mapping to several genes in HG-U133 plus 2?
microarray
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
0
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0
replies
1.9k
views
Interepretation of dmpFinder result in minfi
microarray illuminahumanmethylation450k.db minfi
10.3 years ago ankita.chatterjee88 • 0
1
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2
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1.5k
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Gene Ontology Problems
software error go microarray oligo hugene20st
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 10
0
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0
replies
1.4k
views
WG6 microarray version 2 and 3, reading in txt file from two platforms
limma illumina microarray normalization readillumina
10.3 years ago kanacska ▴ 10
3
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1
reply
2.7k
views
Adjusting for gender using limma
limma microarray sequencing
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 420
0
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1
reply
1.2k
views
simpleaffy issue with empty PairComp calls slot
simpleaffy microarray r
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
2
votes
6
replies
2.3k
views
Correct setup of a design matrix for a two-color, interwoven microarray loop design with dye swaps
limma design matrix dye-swap two-colour microarray limma
updated 10.3 years ago by 68k • written 10.3 years ago by • 0
3
votes
6
replies
3.1k
views
How to get a list of differentialy expressed genes with data from Illumina array?
limma illumina microarray lmfit differential gene expression
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 10
1
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2
replies
2.4k
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Problems with the genes name
annotation software error microarray oligo annotationdbi
updated 10.3 years ago by 68k • written 10.3 years ago by ▴ 10
0
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0
replies
1.1k
views
Differential Expression Analyses of Entire Connectivity Map (microarray) dataset
differential expression microarray R
10.3 years ago Bioinformatist Newbie • 0
1
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2
replies
7.2k
views
explanation of makeContrasts function of limma package
limma microarray R geneexpression
updated 10.3 years ago by ★ 29k • written 10.3 years ago by ▴ 10
1
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1
reply
1.3k
views
altcdfenvs get wrapCdfEnvAffy error
software error microarray cdf
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 930
0
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2
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1.6k
views
microarray agilent data
microarray agilent limma
updated 10.4 years ago by ▴ 130 • written 10.4 years ago by • 0
4
votes
3
replies
1.9k
views
Non specific filtering prior to differential expression with limma based on variance
limma microarray normalization
updated 10.4 years ago by 53k • written 10.4 years ago by ▴ 420
0
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2
replies
1.5k
views
expression pattern tracking of some defined gene in a microarray by heatmap
heatmap microarray
10.4 years ago Angel ▴ 40
0
votes
6
replies
5.2k
views
How to normalize in R Illumina HumanHT-12 V3.0 expression beadchip data
illumina normalization microarray
updated 10.4 years ago by ★ 1.1k • written 10.4 years ago by ▴ 10
0
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2
replies
6.4k
views
How to read bgx files in R
microarray annotation illumina
10.4 years ago kanacska ▴ 10
0
votes
2
replies
4.4k
views
Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
updated 10.4 years ago by • 0 • written 12.7 years ago by ★ 8.2k
0
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1
reply
2.1k
views
normalised data after RUV2( )
ruv microarray
updated 10.4 years ago by ▴ 30 • written 10.5 years ago by ▴ 160
0
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3
replies
1.3k
views
i need a tab-delimited format
microarray affy
10.4 years ago Angel ▴ 40
1
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1
reply
1.6k
views
Limma on a merged ESET
limma microarray eset
10.4 years ago Vani ▴ 20
0
votes
2
replies
1.8k
views
Convert Affymetrix ID's to Kegg Pathway
microarray
updated 10.4 years ago by ▴ 50 • written 10.4 years ago by • 0
1
vote
1
reply
1.7k
views
RUVnormalize- should input be pre-normalized?
ruvnormalize microarray normalization
updated 10.4 years ago by ▴ 10 • written 10.5 years ago by ▴ 110
0
votes
1
reply
1.4k
views
replacement package Agi4x44PreProcess
microarray agilent
updated 10.4 years ago by ★ 1.1k • written 10.4 years ago by ▴ 320
0
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0
replies
2.4k
views
Error while running RankProd RPadvance from 2 origins - invalid 'row.names' length
rankprod microarray
10.4 years ago sumedharoy • 0
14
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16
replies
3.6k
views
Limma - discrepancy in number of significant genes
limma differential gene expression microarray linear model
updated 10.4 years ago by 68k • written 10.4 years ago by ▴ 10
0
votes
1
reply
1.9k
views
The number of features of Expression Set for Affymetrix miRNA 4.0 data preprocsessed by oligo package
affy oligo microarray preprocessing microrna
updated 10.4 years ago by 68k • written 10.4 years ago by • 0
6
votes
22
replies
5.4k
views
Oligo package: paCalls questions
microarray oligo
updated 10.5 years ago by ★ 3.9k • written 10.5 years ago by ▴ 20
1
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5
replies
1.5k
views
Single channel v two channel normalization
normalization limma microarray
10.5 years ago SSK ▴ 10
0
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0
replies
988
views
general question about homogeneity of variances between microarray groups
Microarray limma
13.3 years ago • updated 10.5 years ago Gordon Smyth 53k
0
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0
replies
1.7k
views
News: Rebuilding annotation packages for Affymetrix Gene/Exon ST Arrays
affymetrix annotation microarray News
10.5 years ago James W. MacDonald 68k
2
votes
8
replies
4.5k
views
Problems importing Illumina raw data with lumi R package
Illumina Human HT-12 v4 lumi limma microarray
updated 10.5 years ago by 53k • written 10.5 years ago by ▴ 840
0
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0
replies
1.2k
views
Remove coexpressed gene pair modules using eisa package
isa2 eisa microarray affymetrix
10.6 years ago dhwani.dholakia • 0
3
votes
3
replies
2.1k
views
Annotating the results with associated gene symbols
microarray limma
updated 10.6 years ago by 53k • written 11.1 years ago by • 0
1
vote
1
reply
2.1k
views
Error in Package GEOquery
geoquery error R microarray
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 20
2
votes
2
replies
4.0k
views
How to Normalize the Microarray Data Obtained from ncbi?
microarray normalization ncbi
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 20
2
votes
4
replies
1.9k
views
Help with microarray analysis (forming cdf files)
microarray affy makecdfenv
updated 10.6 years ago by 68k • written 10.6 years ago by ▴ 10
1
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2
replies
5.1k
views
Differential Analysis for gene expression from TCGA (Level 3)
limma microarray tcga
updated 10.6 years ago by ★ 13k • written 10.6 years ago by • 0
1
vote
8
replies
2.5k
views
boxplot, microarray, hugene 2.0 st
boxplot microarray pd.hugene.2.0.st
10.6 years ago kanacska ▴ 10
0
votes
0
replies
1.0k
views
pssm for r language
microarray
10.6 years ago m016648 • 0
3
votes
7
replies
5.2k
views
miRNA microarray analysis
microarray cdf
updated 10.6 years ago by 53k • written 10.6 years ago by ▴ 10
0
votes
1
reply
3.5k
views
Array Express HuGene-1_1-st-v1 CDF problem
cdf microarray affy
updated 10.6 years ago by 68k • written 10.6 years ago by • 0
0
votes
3
replies
1.4k
views
Getting annotated and normalized data.
microarray rstudio annotation
updated 10.6 years ago by 68k • written 10.6 years ago by • 0
0
votes
0
replies
1.3k
views
Invitation Research Collaborations
cancer microarray mirna sequencing
10.7 years ago alexandru.floares • 0
0
votes
1
reply
1.7k
views
install xps in ubuntu 14.04
xps microarray installation
updated 10.7 years ago by ★ 3.9k • written 10.7 years ago by • 0
0
votes
0
replies
1.1k
views
Support for MouseDivGeno arrays in Bioconductor
snpchip microarray affy
10.7 years ago Sean Davis 21k
3
votes
5
replies
3.2k
views
How to Find Common Dysregulated Genes in Two or More Sets of Microarray Data?
disease genetics micro array data microarray
updated 10.7 years ago by 53k • written 10.7 years ago by ▴ 20
3
votes
2
replies
4.1k
views
How to Find OMIM id's Corresponding to a List of Gene Symbols in R?
microarray omim gene disorder
updated 10.7 years ago by ▴ 30 • written 10.7 years ago by ▴ 20
2,319 results • Page 12 of 47
Recent ...
Replies
Comment: Question about DESeq2 Design for Paired Treatment Study by ATpoint ★ 5.0k
It's a paired analysis so you don't need any patient-specific covariates such as age and sex. What you call batch effect might just be the …
Comment: problem reading bam files into nucleR by efoss ▴ 10
I thought I might be able to track down a problematic line in the bam file by repeatedly splitting the bam file in and then running the co…
Answer: two questions about limma by Gordon Smyth 53k
Answered here: https://support.bioconductor.org/p/16318/
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication? by Ahmed Salah • 0
Thank you very much! will take that into consideration
Comment: Large logFC but somewhat high FDR by JKim • 0
Thank you very much for taking the time to answer the question. I really appreciate your insights and comments.
Votes
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
Comment: upstream git branches of bioc-release
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