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News: Deadline for devel branch 3.11 to pass R CMD build and R CMD check
release devel bioconductor News
5.7 years ago shepherl 4.2k
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News: Bioconductor Release 3.10 Code Freeze Deadline
release deadline bioconductor News
5.7 years ago shepherl 4.2k
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News: Bioconductor 3.11 db0s are available
annotation db0 news release News
5.7 years ago kayla.interdonato ▴ 160
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956
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News: Importing alevin inferential replicates into R with tximport
tximport News
5.7 years ago Michael Love 43k
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News: Bioconductor Release 3.11 Schedule Posted
release deadlines builds packages News
5.8 years ago shepherl 4.2k
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News: BioC2019 Code of Conduct violation response
bioc2019 News
updated 5.8 years ago by 25k • written 5.8 years ago by ★ 1.1k
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News: [rOpenSci] Community Call: Maintaining an R Package
ropensci webinar News
5.8 years ago Leonardo Collado Torres ★ 1.1k
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News: [CDSB] Workshop 2020: Building workflows with RStudio and Bioconductor for single cell RNA-seq analysis
CDSB Mexico Workshop News
5.8 years ago Leonardo Collado Torres ★ 1.1k
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News: Bioc2020 - Deadline for workshops/talk/poster proposals TODAY!
conference bioc2020 event deadline News
5.8 years ago shepherl 4.2k
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News: Bioc2020 - Deadline for workshops/talk/poster TOMORROW
bioc2020 event conference bioconductor News
5.8 years ago shepherl 4.2k
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News: [CDSB] From Bioconductor users to developers: our first community submission
CDSB News
5.8 years ago Leonardo Collado Torres ★ 1.1k
3
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News: [Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv spatialLIBD News
written 5.8 years ago by ★ 1.1k
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
5.8 years ago shepherl 4.2k
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963
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News: Changes to BioMart in Ensembl release 100 and Ensembl Genomes release 47
biomaRt Ensembl News
5.8 years ago Astrid_Ensembl • 0
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in ONE week
bioconductor conference event bioc2020 News
5.8 years ago shepherl 4.2k
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926
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News: RNAseq data analysis with R and Bioconductor
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5.8 years ago info ▴ 10
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News: Bioc2020 - Deadline for workshops/talk/poster proposals in two weeks!
bioconductor bioc2020 event conference News
5.8 years ago shepherl 4.2k
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1.1k
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News: Bioc2020 - Registration - Call for abstracts for workshops/talks/poster - travel and caregiver scholarships
conference bioconductor event bioc2020 News
5.8 years ago shepherl 4.2k
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News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
5.8 years ago Laurent Gatto 1.6k
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News: Bioconductor Community Advisory Board Nominees
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updated 5.8 years ago by 21k • written 5.8 years ago by ▴ 1000
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News: Results: Bioconductor Community Survey
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5.9 years ago Matthew Ritchie ▴ 1000
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News: Bioc2020 - Registration Open - Call for abstracts workshops/talks/posters Open
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5.9 years ago shepherl 4.2k
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News: Ensembl 99 has been released and renaming of species
biomart ensembl e99 mart news News
5.9 years ago Thomas Maurel ▴ 800
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News: Updates to this Bioconductor Support Site
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5.9 years ago shepherl 4.2k
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News: EMBO | EMBL Symposium: The Molecular Basis and Evolution of Sexual Dimorphism
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5.9 years ago EMBL Events • 0
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
5.9 years ago shepherl 4.2k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
6.0 years ago shepherl 4.2k
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News: New BSgenome data packages for bosTau9, rheMac10, danRer11, and galGal6
BSgenome News
6.0 years ago Hervé Pagès 16k
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News: BioC2020: mark your calendars!
conference News
6.0 years ago Levi Waldron ★ 1.1k
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News: EnsDb databases for Ensembl release 98 provide now also transcripts' GC content
annotation ensembldb EnsDb AnnotationHub News
6.0 years ago Johannes Rainer ★ 2.1k
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News: course - Protemics with R and Bioconductor - 17-19 February 2020 in Berlin
Bioconductor R Proteomics News
6.1 years ago info ▴ 10
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900
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News: Single Package Builder for New Package Submissions
new package submission release News
6.1 years ago shepherl 4.2k
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1.3k
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News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
6.1 years ago shepherl 4.2k
0
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2
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News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
6.2 years ago • updated 6.1 years ago shepherl 4.2k
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News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
6.1 years ago shepherl 4.2k
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News: Bioconductor 3.10 is released!!
release software packages bioconductor News
6.1 years ago shepherl 4.2k
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1.8k
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News: European Bioconductor meeting 2019, 9 - 10 December in Brussels, Belgium
conference EuroBioc News
6.2 years ago • updated 6.1 years ago Laurent Gatto 1.6k
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News: Important Deadlines for RELEASE
release devel deadline News
updated 6.1 years ago by 25k • written 6.1 years ago by 4.2k
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News: Bioconductor 3.10 db0s are available
news release annotation db0 deadline News
6.2 years ago kayla.interdonato ▴ 160
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News: Deadline for commits to current Release 3.9 Branch
release deadline News
6.2 years ago shepherl 4.2k
3
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News: Bioconductor Community Survey
feedback community News
6.2 years ago Matthew Ritchie ▴ 1000
1
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News: Package Submission Deadline is TODAY!!
release new submission package submission deadline News
6.2 years ago shepherl 4.2k
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News: Certificate ERROR resolved
website bioconductor News
6.2 years ago shepherl 4.2k
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1.4k
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News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
6.3 years ago • updated 6.2 years ago shepherl 4.2k
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1.2k
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News: Deadline for commits to current Release 3.9 Branch and Devel 3.10
release freeze deadline devel News
6.2 years ago shepherl 4.2k
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1.4k
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News: Ensembl 98 has been released and renaming of species
biomart ensembl e98 mart News
6.2 years ago Thomas Maurel ▴ 800
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1.1k
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
6.2 years ago Ning Leng • 0
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News: Organizing Committee for BioC2020
conference committee Bioc2020 News
6.2 years ago shepherl 4.2k
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944
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News: Protemics with R and Bioconductor course in Berlin
R Proteomics News
6.2 years ago info ▴ 10
5
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News: Cite Bioconductor packages using Zotero (browser extension)
Zotero News
6.2 years ago Qiang ▴ 80
345 results • Page 2 of 7
Recent ...
Replies
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
Answer: DESeq(dds, parallel=TRUE) wrong args for environment subassignment by Michael Love 43k
The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
Answer: PTM analysis in LIMPA by Gordon Smyth 53k
For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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