Showing : org.Hs.eg.db • reset
44
votes
29
replies
11k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 3.0 years ago by ▴ 130 • written 3.1 years ago by ▴ 160
15
votes
9
replies
13k
views
Best way to convert uniprot accessions to entrez gene identifiers in R
org.hs.eg.db uniprot accessions entrez gene identifiers
updated 8.7 years ago by 65k • written 8.7 years ago by ▴ 160
11
votes
13
replies
4.0k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
3.4 years ago • updated 3.3 years ago rohitsatyam102 ▴ 20
7
votes
19
replies
17k
views
Can't load package "org.Hs.eg.db"
org.Hs.eg.db
updated 2.8 years ago by • 0 • written 8.6 years ago by ▴ 40
7
votes
4
replies
3.5k
views
PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
txdb txdb.hsapiens.ucsc.hg19.knowngene txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db annotation
8.0 years ago enricoferrero ▴ 660
7
votes
3
replies
1.5k
views
Presence of GO annotations for human mitochondrial genes in org.Hs.eg.db?
org.hs.eg.db gene ontology mitochondria
updated 6.5 years ago by 65k • written 6.5 years ago by ▴ 40
6
votes
4
replies
2.0k
views
org.Hs.eg.db error same ensembl ID in different genes
org.hs.eg.db
updated 6.7 years ago by ▴ 50 • written 6.7 years ago by ▴ 10
6
votes
15
replies
5.9k
views
Couldn't load org.Hs.eg.db
org.Hs.eg.db
updated 3.0 years ago by • 0 • written 3.1 years ago by ▴ 30
5
votes
13
replies
4.2k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
5
votes
2
replies
5.4k
views
org.Hs.eg.db - convert ALIAS to ENTREZID, GENENAME
org.hs.eg.db select
8.6 years ago Brian Smith ▴ 120
5
votes
7
replies
2.6k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 3.3 years ago by 50k • written 3.3 years ago by • 0
4
votes
2
replies
1.4k
views
ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
AnnotationDbi EnsDb.Hsapiens org.Hs.eg.db
updated 3.3 years ago by ★ 2.0k • written 3.3 years ago by • 0
4
votes
5
replies
1.5k
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 5.1 years ago by 65k • written 5.1 years ago by ▴ 10
4
votes
3
replies
2.3k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
3.4 years ago Emilia ▴ 30
4
votes
4
replies
1.9k
views
Annotation with org.Hs.eg.db Genome Build 38
AnnotationDbi org.Hs.eg.db
3.4 years ago Bine ▴ 40
4
votes
6
replies
2.3k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub OrganismDbi org.Hs.eg.db
updated 2.2 years ago by 50k • written 2.2 years ago by • 0
4
votes
3
replies
1.8k
views
Gene-GO-term relationship discrepancy between org.Hs.eg.db and geneontology.org
org.hs.eg.db
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
3
votes
3
replies
1.2k
views
org.Hs.eg.db output has more lines than the input- I need to combine the input and output
org.Hs.eg.db annotation bioconductor
updated 8.7 years ago by ★ 28k • written 8.7 years ago by • 0
3
votes
3
replies
3.6k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger DGEList org.hs.eg.db gene annotation
updated 2.6 years ago by • 0 • written 6.4 years ago by ▴ 830
3
votes
2
replies
5.7k
views
error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'"
software error org.hs.eg.db
updated 9.4 years ago by 25k • written 9.4 years ago by • 0
3
votes
6
replies
1.6k
views
error using org.Hs.eg.db package : Error in get(load(file)) :
org.hs.eg.db select
9.1 years ago tina.khajeh • 0
3
votes
3
replies
2.4k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
3.1 years ago sgupt46 • 0
3
votes
2
replies
1.3k
views
Error when using org.Hs.eg.db package
org.Hs.eg.db
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
3
votes
3
replies
5.1k
views
failing to install the package org.Hs.eg.db in R (version 3.5.2 )
org.Hs.eg.db AnnotationDbi
updated 14 months ago by • 0 • written 5.2 years ago by • 0
3
votes
2
replies
1.5k
views
Why does requireNamespace("org.Hs.eg.db") load DBI and RSQLite?
org.hs.eg.db DBI rsqlite
updated 8.1 years ago by 25k • written 8.1 years ago by 50k
2
votes
4
replies
431
views
Use of data packages in containers
org.Hs.eg.db
updated 4 months ago by ▴ 730 • written 4 months ago by ▴ 20
2
votes
6
replies
2.8k
views
Error: hgu95av2PFAM is defunct
org.Hs.eg.db
8.8 years ago Aditya ▴ 160
2
votes
9
replies
4.0k
views
Unable to calculate in parallel what can be calculated on a for loop
biocparallel foreach org.hs.eg.db gostats
updated 7.4 years ago by 25k • written 7.5 years ago by ▴ 730
2
votes
1
reply
1.7k
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
2
votes
5
replies
971
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.9 years ago by 65k • written 4.9 years ago by • 0
2
votes
2
replies
846
views
Annotation: Use of org.Hs.egCHR to map Gene Entrez to Chromosome
org.Hs.egCHR org.Hs.eg.db
3.4 years ago Bine ▴ 40
2
votes
2
replies
2.3k
views
Error while installing "org.Hs.eg.db"
org.Hs.eg.db
3.4 years ago sevencds ▴ 10
2
votes
2
replies
2.6k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 3.3 years ago by ★ 2.0k • written 3.3 years ago by • 0
2
votes
3
replies
1.3k
views
org.Hs.eg.db gives more than one ENTREZID for a gene symbol
org.Hs.eg.db AnnotationDbi
updated 15 months ago by 65k • written 15 months ago by • 0
1
vote
1
reply
2.5k
views
Use of org.Hs.eg.db and TxDb.Hsapiens.UCSC.hg19.knownGene
TxDb.Hsapiens.UCSC.hg19.knownGene org.hs.eg.db
updated 7.5 years ago by 6.7k • written 7.5 years ago by • 0
1
vote
1
reply
936
views
genes in rhesus genome (ref. TxDb.Mmulatta.UCSC.rheMac8.refGene)
org.hs.eg.db org.mmu.eg.db
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 120
1
vote
1
reply
927
views
Error with installation of org.Hs.eg.db
software error org.Hs.eg.db
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
1
vote
2
replies
1.5k
views
PATHVIEW incorrect values being plotted in output
pathview org.Hs.eg.db
3.0 years ago Rodrigo • 0
1
vote
2
replies
1.2k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
1
vote
3
replies
2.8k
views
Error in installing org.Hs.eg.db
org.Hs.eg.db org.H
2.4 years ago 2041792073 • 0
1
vote
6
replies
2.0k
views
why org.Hs.egGO2ALLEGS contain genes number difference from GO database?
org.Hs.eg.db org.Hs.egGO2ALLEGS
updated 22 months ago by • 0 • written 4.7 years ago by • 0
1
vote
2
replies
1.2k
views
The RSQLite package fails to be installed
RSQLite org.Hs.eg.db
2.7 years ago chenghaomai • 0
1
vote
1
reply
1.2k
views
org.Hs.eg.db，Error: could not find function ".libPath"
org.Hs.eg.db
updated 2.1 years ago by ★ 3.3k • written 2.1 years ago by • 0
1
vote
12
replies
2.8k
views
Error: C stack usage when installing Txdb package
txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db
updated 6.4 years ago by ★ 3.7k • written 6.4 years ago by ★ 1.1k
1
vote
3
replies
12k
views
Converting gene symbol list to Entrez IDs
org.hs.eg.db entrez gene identifiers genesymbols
updated 6.2 years ago by ▴ 70 • written 6.2 years ago by ▴ 10
0
votes
4
replies
4.0k
views
org.Hs.eg.db - hg38 build?
org.hs.eg.db
updated 7.8 years ago by ▴ 180 • written 7.8 years ago by ▴ 120
0
votes
1
reply
537
views
Mapping of probe IDs to gene gene symbols for Affymetrix Human Clariom D Assay platform
GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db
updated 13 months ago by 65k • written 13 months ago by • 0
0
votes
5
replies
3.0k
views
Ensembl identifiers mapping to Gene Symbol
org.Hs.eg.db
7.9 years ago • updated 7.8 years ago maedakus ▴ 10
0
votes
3
replies
1.2k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
21 months ago • updated 20 months ago sandmann.t ▴ 70
0
votes
1
reply
594
views
REFSEQ identifiers XP_047XXXXXX do not have ENTREZID within org.Hs.eg.db
org.Hs.eg.db
updated 20 months ago by 50k • written 20 months ago by • 0
50 results • Page 1 of 1
Recent ...
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Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
Please ask you own question. Inserting your own dataset into someone else's question like this is very impolite. I have already answered m…
Comment: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
limma most certainly is available. It installs in R 4.4.0 and Bioc 3.19 with no issues at all. If you're having trouble with Bioc installa…
Comment: package goseq seems to be not available on the latest version of R by Patrycja ▴ 20
limma package also isn't available.Is there any information when these packages will be available?
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p- by Chris • 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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