Showing : rnaseqGene • reset
0
votes
3
replies
356
views
RNA-seq with DESeq2 shrinkage estimation
Regression DESeq2 rnaseqGene
updated 6 weeks ago by 67k • written 6 weeks ago by • 0
3
votes
6
replies
683
views
A question occur when using DESeq2 on a complex design
DESeq2 rnaseqGene RNASeq
written 8 weeks ago by • 0
0
votes
3
replies
440
views
Trouble with creating Series RNA-seq normalized counts matrix
GEO rnaseqGene RNA
8 weeks ago gallantk5 • 0
0
votes
0
replies
226
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution rnaseqGene RNAseq
12 weeks ago JG13 • 0
2
votes
2
replies
437
views
Control group between 2 batches have different expression in RNAseq data
BatchQC BatchEffect rnaseqGene Normalization
updated 3 months ago by ▴ 10 • written 4 months ago by • 0
1
vote
2
replies
385
views
Deseq2
DESeq2 rnaseqGene
updated 3 months ago by ▴ 210 • written 3 months ago by • 0
0
votes
1
reply
280
views
normalization using Deseq2
DESeq2 rnaseqGene Normalization
updated 4 months ago by ★ 4.4k • written 4 months ago by • 0
2
votes
7
replies
872
views
deseq2 results
DESeq2 DifferentialExpression rnaseqGene DifferentialRegulation
4 months ago sajadahmad41454 • 0
0
votes
2
replies
498
views
RNAseq analysis
rnaseqGene edgeR DEGraph DifferentialExpression
updated 6 months ago by 51k • written 6 months ago by • 0
3
votes
5
replies
921
views
DESEQ Inquiry
DESeq2 rnaseqGene RNASeqData limma RNASeq
updated 6 months ago by 42k • written 7 months ago by ▴ 10
2
votes
1
reply
378
views
Continuous variable to identify responder genes using DESeq2
DESeq2 rnaseqGene DifferentialExpression
updated 7 months ago by 42k • written 7 months ago by ▴ 20
5
votes
6
replies
842
views
Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
8 months ago Shaimaa Gamal • 0
1
vote
4
replies
757
views
rnaSeqGene workflow not available in Bioconductor 3.18
rnaseqGene Bioconductor3.18 DifferentialExpression release
updated 10 months ago by 42k • written 10 months ago by ▴ 60
0
votes
2
replies
1.2k
views
R could not could not find function "makeTxDbFromGFF" after loading (GenomicFeatures)
rnaseqGene
updated 14 months ago by 42k • written 14 months ago by • 0
1
vote
3
replies
1.0k
views
Bulk RNA seq with deseq2, rnaseqGene, or edgeR
DESeq2 edgeR rnaseqGene
updated 20 months ago by 42k • written 20 months ago by • 0
0
votes
3
replies
2.1k
views
Gene ontology enrichment analysis
rnaseq rnaseqGene geneontology
updated 22 months ago by 67k • written 22 months ago by • 0
1
vote
2
replies
1.0k
views
toptable sort .by set
limma rnaseqGene
2.4 years ago snowmattin • 0
0
votes
1
reply
999
views
Ensembl dataset version
tximport rna rnaseqGene biomaRt
updated 2.7 years ago by ★ 4.4k • written 2.7 years ago by • 0
6
votes
10
replies
1.7k
views
rnaseqGene: Different output when generating step by step airway dataset
tximeta DESeq2 rnaseqGene
updated 2.9 years ago by 42k • written 2.9 years ago by ▴ 20
4
votes
1
reply
2.3k
views
mitochondrial RNA percentage in bulk RNAseq data
rnaseqGene RNASeqR DESeq2 RNAseq
updated 2.9 years ago by 42k • written 2.9 years ago by ▴ 10
2
votes
2
replies
979
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
2.9 years ago • updated 16 months ago diangomaiga • 0
2
votes
2
replies
1.9k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
3.3 years ago SUMIT • 0
0
votes
0
replies
856
views
display .CT files in a BioC package
RNAinteract rnaseqGene RNASeqRData rnaseqcomp
3.6 years ago Bogdan ▴ 670
1
vote
6
replies
1.6k
views
Contamination in bulkseq samples. Looking at correlated genes?
RNASeqData DESeq2 rnaseqGene
3.6 years ago Seaweed • 0
3
votes
3
replies
1.0k
views
A problem about RNA-seq workflow:9 Time course experiments
rnaseqgene
updated 4.3 years ago by 42k • written 4.3 years ago by ▴ 40
1
vote
3
replies
895
views
typo in rnaseqGene workflow vignette.
rnaseqGene workflow deseq2
updated 4.7 years ago by 42k • written 4.7 years ago by ★ 1.5k
0
votes
7
replies
3.2k
views
Issue installing RNA-seq workflow
software error deseq2 workflow rnaseqGene
updated 5.2 years ago by 25k • written 5.2 years ago by • 0
0
votes
2
replies
1.1k
views
DESEQ2: rnaseqGene fisison tutorial time course graph has non-numerical x-axis
deseq2 rnaseqGene
5.5 years ago courtney.stairs • 0
1
vote
2
replies
1.3k
views
how to install package of "rnaseqGene" for R (ver: 3.5.2) for windows
rnaseqGene
updated 5.6 years ago by 67k • written 5.6 years ago by ▴ 10
3
votes
5
replies
8.4k
views
How to find Top 10 expressed genes in DESeq2
deseq2 baseMean differential gene expression rnaseqgene
updated 5.6 years ago by ★ 1.4k • written 5.6 years ago by • 0
1
vote
3
replies
1.4k
views
how to find expressed genes in RNAseq
deseq2 rnaseq differential gene expression featurecounts rnaseqGene
5.8 years ago • updated 5.7 years ago melkile26 • 0
2
votes
5
replies
1.8k
views
Accessing R 3.4.2 version on mac, to use 'rnaseqGene' package
rnaseq rnaseqgene R 3.4.2 Mac
updated 6.4 years ago by 4.0k • written 6.4 years ago by • 0
0
votes
2
replies
1.4k
views
Is there a data package containing complex RNA-Seq data?
RNAseqdataset airway deseq2 rangedsummarizedexperiment rnaseqgene
updated 6.5 years ago by ▴ 160 • written 6.5 years ago by • 0
0
votes
1
reply
1.9k
views
can't install workflow "rnaseqGene" with Bioconductor version3.3
bioconductor workflowinstall error rnaseqgene
updated 8.3 years ago by ★ 6.8k • written 8.3 years ago by ▴ 20
0
votes
4
replies
1.9k
views
workflow.R in BioC 3.3
workflows rnaseqgene
updated 8.3 years ago by • 0 • written 8.3 years ago by • 0
2
votes
5
replies
3.2k
views
Programs used in RNA-seq workflow
deseq2 bioconductor workflows differential gene expression rnaseqgene
8.5 years ago cirisarri95 • 0
0
votes
1
reply
2.1k
views
Unable to access index for repository... rnaseqGene sequencing workflows
rnaseqGene genomic sequencing
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by • 0
0
votes
6
replies
4.1k
views
Problem when constructing a TxDb with makeTxDbFromGFF:Error in dbGetQuery(conn,SQL) :
R differential expression rnaseqgene
8.9 years ago JunLVI ▴ 40
3
votes
2
replies
1.9k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 9.2 years ago by 67k • written 9.2 years ago by • 0
6
votes
8
replies
2.6k
views
error in RNA-Seq workflow at the gene level
rnaseqgene genomicalignments
updated 9.3 years ago by ★ 8.2k • written 9.3 years ago by • 0
0
votes
2
replies
3.2k
views
Using RNA-Seq Workflow using Real Life FASTQ data - and Mouse Reference Genome
deseq2 deseqdataset rnaseqgene fastq reference genome
updated 9.4 years ago by 67k • written 9.4 years ago by • 0
0
votes
2
replies
5.6k
views
Plots and Heat Maps not displaying in RGui Window
plot heatmap graphical rnaseqgene deseqdataset
9.4 years ago greg.mulhearn • 0
0
votes
3
replies
1.8k
views
Questions regarding convertIDs in the rnaseqGene Package
rnaseqGene convertIDs
9.5 years ago Cheng-Yuan Kao ▴ 100
0
votes
0
replies
1.3k
views
Minor error in the RNASeqGene workflow
rnaseqgene
9.6 years ago snf ▴ 10
44 results • Page 1 of 1
Recent ...
Replies
Comment: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k
What does `sampleid` represent? If you use duplicateCorrelation(), then the blocking factor should be subject, it isn't clear from your que…
Answer: Question on performing ANOVA-like analysis using limma by Gordon Smyth 51k
In time course experiments such as this, it is essential to account for baseline variability between subjects, so the second analysis given…
Comment: AffylmGUI does not start wit R 4.4.1 by Gordon Smyth 51k
Glad to hear that you have figured it out. Your experience might help other people with limmaGUI or affylmGUI on MacOS as well.
Answer: rtracklayer accessing UCSC data table not working by James W. MacDonald 67k
The track argument is deprecated now, so you can omit it. ``` > tbl.rmsk <- getTable(ucscTableQuery(mySession, table = "rmsk", range = …
Answer: For feline genome by James W. MacDonald 67k
This support site is meant to help people with specific questions about using Bioconductor software. There is a [vignette for `ROntoTools`]…
Votes
Comment: AffylmGUI does not start wit R 4.4.1
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used
Answer: unable to access Annotationhub latest record
Awards • All
Popular Question to Gordon Smyth 51k
Popular Question to Jose Guillen ▴ 10
Popular Question to micolak0115 • 0
Scholar to Aidan ▴ 40
Popular Question to hayleyw • 0
Locations • All
France, 8 minutes ago
United Kingdom, 12 minutes ago
WEHI, Melbourne, Australia, 15 minutes ago
Australia, 1 hour ago
European Union, 2 hours ago
Traffic: 479 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6