Showing : software error • reset
16
votes
5
replies
14k
views
Error: Bioconductor version '3.8' requires R version '3.5'
software error
updated 5.0 years ago by ★ 6.5k • written 5.0 years ago by ▴ 10
12
votes
6
replies
12k
views
makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
software error maketxdbfrombiomart
updated 8.4 years ago by • 0 • written 8.5 years ago by ▴ 40
10
votes
9
replies
6.5k
views
CAMERA error: $ operator not defined for this S4 class
software error CAMERA
updated 8.8 years ago by ▴ 20 • written 8.8 years ago by ▴ 60
9
votes
2
replies
8.8k
views
Using RSEM with tximport and DESeq2
deseq2 tximport software error bug
updated 2.7 years ago by 41k • written 7.2 years ago by ▴ 10
8
votes
8
replies
2.6k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 2.5 years ago by ▴ 290 • written 3.8 years ago by ▴ 40
7
votes
12
replies
2.0k
views
readGAlignmentPairs fail to read paired end data
software error
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 90
7
votes
8
replies
2.6k
views
Very small bug in DESeq2
software error
7.6 years ago arfranco ▴ 130
7
votes
14
replies
3.6k
views
Issue setting up BiocManager due to mgcv / clang?
software error
updated 5.1 years ago by 25k • written 5.1 years ago by • 0
7
votes
2
replies
4.4k
views
Help in installing certain pacakges
software error install
updated 3.7 years ago by 25k • written 3.7 years ago by ▴ 40
6
votes
8
replies
7.8k
views
Problem installing BiocGenerics
software error BioGenerics bioclite
6.5 years ago p.janitza ▴ 50
6
votes
2
replies
2.2k
views
How to add my own Entrez Gene IDs rather than using the ones from a default package?
annotation entrez gene ids software error
updated 5.0 years ago by 50k • written 5.0 years ago by ▴ 60
6
votes
4
replies
2.8k
views
Gviz highlighted regions displaying behind main plot
gviz software error
updated 9.4 years ago by ★ 1.6k • written 9.4 years ago by ▴ 40
6
votes
2
replies
1.5k
views
csaw: Error in path.expand(bam.file) : invalid 'path' argument
csaw software error
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
6
votes
5
replies
7.9k
views
biomaRt: error using useDataset or useMart
software error biomart usemart usedataset
updated 6.4 years ago by ★ 6.5k • written 6.4 years ago by ▴ 40
6
votes
4
replies
1.2k
views
Missing KRAS in locateVariants or TxDb.Hsapiens.UCSC.hg19.knownGene?
software error annotation
updated 9.6 years ago by ★ 6.8k • written 9.6 years ago by ▴ 10
6
votes
12
replies
1.8k
views
CRISPRseek ERROR, can't read featureWeightMatrix in, wrong data format
CRISPRseek software error
4.5 years ago nils.hassel • 0
6
votes
4
replies
9.8k
views
converting integer to numeric
software error
8.3 years ago Angel ▴ 40
6
votes
11
replies
3.7k
views
arrayQualityMetrics: "All SVG style attribute must have length 1" and other errors
arrayqualitymetrics svg software error
updated 7.9 years ago by ▴ 40 • written 9.4 years ago by ▴ 200
6
votes
5
replies
864
views
Security process for Bioconductor
software error
updated 3.8 years ago by 25k • written 3.8 years ago by ▴ 30
6
votes
2
replies
1.7k
views
warning in R
software error
updated 8.9 years ago by 25k • written 8.9 years ago by ▴ 40
5
votes
4
replies
1.9k
views
DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
deseq2 software error
updated 3.8 years ago by 41k • written 3.8 years ago by ▴ 10
5
votes
11
replies
1.6k
views
Rsubread: change in behavior when accepting mixed paired end and single end files
software error Rsubread
updated 3.9 years ago by 50k • written 3.9 years ago by • 0
5
votes
5
replies
837
views
Installation: go to specific version of a package prompted
software error installation
updated 4.3 years ago by 65k • written 4.3 years ago by • 0
5
votes
11
replies
2.6k
views
Certificate problem with ExperimentHub / AnnotationHub
software error curatedmetagenomicdata annotationhub experimenthub
updated 7.4 years ago by ★ 1.1k • written 7.4 years ago by ▴ 10
4
votes
5
replies
1.8k
views
Can't install msa on FreeBSD
software error FreeBSD msa
6.7 years ago spcohen2 ▴ 20
4
votes
4
replies
1.9k
views
.onLoad failed in loadNamespace() for 'BiocInstaller'
software error knitr
updated 7.9 years ago by 25k • written 7.9 years ago by ▴ 10
4
votes
10
replies
1.6k
views
DESeq2 interacting with agricolae
deseq2 software error
updated 7.7 years ago by ★ 13k • written 7.7 years ago by • 0
4
votes
5
replies
2.1k
views
how to get exons of multiple genes
software error
3.6 years ago pegah.taklifi ▴ 30
4
votes
4
replies
6.4k
views
plotPCA in DESeq2
software error deseq2
3.9 years ago yueli7 ▴ 20
4
votes
2
replies
3.0k
views
Problem with locfit after update bioconductor to Bioconductor version 3.5
software error
updated 6.9 years ago by ★ 13k • written 6.9 years ago by ▴ 10
4
votes
3
replies
7.7k
views
Error message that there is no package called Biobase
software error
6.8 years ago mdroog • 0
4
votes
8
replies
2.1k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 15 months ago by 65k • written 3.9 years ago by ▴ 30
4
votes
17
replies
5.4k
views
Upgrade to 3.1 error
software error
updated 8.8 years ago by ▴ 670 • written 9.0 years ago by ▴ 10
4
votes
6
replies
4.4k
views
Cannot Install BSgenome.Hsapiens.UCSC.hg19
software error package installation
7.0 years ago alongalor ▴ 10
4
votes
5
replies
1.9k
views
makeOrgPackage - ERROR: Two fields in the source DB have the same name
software error AnnotationForge AnnotationDbi
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
4
votes
5
replies
809
views
GeneRfold not available anymore ?
GeneRfold software error
updated 4.5 years ago by 65k • written 4.5 years ago by • 0
4
votes
3
replies
875
views
Does anyone experience expired certificates of BioConductor?
software error
updated 4.6 years ago by 3.9k • written 4.6 years ago by ▴ 20
4
votes
4
replies
1.5k
views
Error in getBM
software error
updated 4.8 years ago by ▴ 20 • written 4.8 years ago by ▴ 20
4
votes
1
reply
818
views
Cannot determine whether maintainer is subscribed to the bioc-devel mailing list (requires admin credentials).
software error
updated 4.9 years ago by ★ 6.5k • written 4.9 years ago by ▴ 10
4
votes
3
replies
3.1k
views
TxDb error: external pointer is not valid
software error GenomicFeatures
4.6 years ago O. William McClung • 0
4
votes
2
replies
1.8k
views
The Mac version of R always reports an error when installing WGCNA
software error WGCNA mac
updated 4.0 years ago by 65k • written 4.0 years ago by • 0
4
votes
6
replies
2.4k
views
mzR (2.8.1) Rcpp (0.12.10) compiler linker issue in Bioconductor 3.4, R 3.3.3
software error mzR Rcpp readMSData2 bioconductor
updated 7.1 years ago by 65k • written 7.1 years ago by • 0
4
votes
5
replies
1.4k
views
Installing DESeq2 fails ; R can't find basic commands like 'rm' and 'mv'
deseq2 install software error
3.8 years ago mja18 ▴ 40
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error annotation genefilter pd.hta.2.0
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 20
3
votes
4
replies
1.9k
views
Rhdf5lib Installation Problem - cp: cannot stat 'hdf5/c++/src/.libs/libhdf5_cpp.a'
software error Rhdf5lib
5.0 years ago z.navidi90 ▴ 10
3
votes
3
replies
1.3k
views
compatibility of R-BioC for Mac OS X Yosemite?
software error
8.9 years ago • updated 8.8 years ago dnaseq ▴ 10
3
votes
5
replies
1.2k
views
Run DESeq with only a handful of genes
deseq2 Small number of genes software error
7.9 years ago xinlian.zhang25 • 0
3
votes
2
replies
5.7k
views
error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'"
software error org.hs.eg.db
updated 9.4 years ago by 25k • written 9.4 years ago by • 0
3
votes
4
replies
5.1k
views
Loading the necessary libraries in R
software error
8.9 years ago Angel ▴ 40
3
votes
9
replies
4.7k
views
topGO "invalid argument to unary operator"
software error topgo
updated 5.5 years ago by 65k • written 5.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Deseq2 and Normalization of RNA sequencing data by kcarey • 0
Noise in terms of expression...to make sure that the information reported is not due to artifacts and actually expression. When I had FPKM …
Answer: NEED FOR NESSASORY HELP by Gordon Smyth 50k
Is this quesion related to your earlier question? https://support.bioconductor.org/p/9157127/ If you've already done an edgeR analysis, yo…
Answer: Gene-by-sample covariates in limma by Gordon Smyth 50k
Your first method would be valid if, instead of taking ratios, you instead used the differences between the log-transformed 13C and 12C int…
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p- by Gordon Smyth 50k
You have discovered something that I have pointed out many times on this forum. fgsea does not implement the classic GSEA method published …
Comment: Once again a "Model matrix not full rank" by James W. MacDonald 65k
In that case both time and treatment are identical things, so choose one and go with it.
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
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