Showing : visualization • reset
11
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0
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5.8k
views
Tutorial: Introduction to Bioconductor for high-throughput sequence analysis
GenomicRanges Annotation RNAseq visualization Tutorial
8.8 years ago Martin Morgan 25k
8
votes
12
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8.7k
views
EdgeR: Explaning dispersion types to newbies
edger dispersion estimatedispersions visualization teaching
updated 5.9 years ago by ★ 28k • written 5.9 years ago by ▴ 20
8
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0
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3.6k
views
Tutorial: Statistics and Computing in Genome Science (CSAMA) Course Material
rnaseq chipseq visualization metagenomics proteomics Tutorial
8.8 years ago Martin Morgan 25k
7
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0
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3.7k
views
Tutorial: New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation genomicranges visualization docker shiny Tutorial
8.1 years ago Vincent J. Carey, Jr. 6.7k
5
votes
11
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1.5k
views
Visualization tool for GC-bias in SE data?
GC-bias ALPINE visualization
updated 3.8 years ago by 41k • written 3.8 years ago by ▴ 20
5
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11
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3.0k
views
Visualization of negative log CPM values
Visualization Normalization ggplot2 edgeR
written 11 months ago by ▴ 20
4
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6
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1.4k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
23 months ago mohammedtoufiq91 ▴ 10
3
votes
3
replies
1.1k
views
how to plot trends for differentialy expressed genes from normalized count matrix (EdgeR)
edger clustering visualization
updated 5.6 years ago by 65k • written 5.6 years ago by ▴ 10
3
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0
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1.7k
views
News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
8.9 years ago • updated 8.7 years ago Matthew Ritchie ▴ 1000
3
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5
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2.3k
views
Explanation of warning output of pathview regarding visualization of a KEGG pathway with Graphviz format
pathview clusterProfiler KEGGpath visualization Graphviz
updated 8.5 years ago by ★ 1.6k • written 8.5 years ago by ▴ 830
2
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0
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1.2k
views
Interactive Visualization with Epivizr (what's new in this release)
epivizr visualization
9.5 years ago Hector Corrada Bravo ▴ 60
2
votes
2
replies
4.3k
views
How can I visualize Gene Set Enrichment Results from gseGo fun. (clusterProfiler)?
ggplot2 clusterprofiler visualization gseGo
7.1 years ago • updated 3.4 years ago tcalvo ▴ 90
2
votes
2
replies
1.1k
views
What can be done to separate the healthy and patient samples in PCA plot and Distance matrix
deseq2 PCAplot Visualization
updated 5.3 years ago by 41k • written 5.3 years ago by • 0
2
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1
reply
3.5k
views
Heatmap function
Visualization Visualization
updated 20.5 years ago by ▴ 210 • written 20.5 years ago by ▴ 150
2
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4
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1.6k
views
chimeraviz - import own fusion file for visualization
visualization chimeraviz
updated 2.8 years ago by • 0 • written 6.8 years ago by ▴ 10
2
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2
replies
1.2k
views
Can't display protein domain data from UCSC table unipDomain using Gviz
Gviz protein visualization UcscTrack protein domains
updated 3.6 years ago by 65k • written 3.6 years ago by ▴ 10
2
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1
reply
2.1k
views
ggbio: examples of overlaying multiple assay datasets
ggbio visualization ggbio
updated 9.6 years ago by ▴ 30 • written 9.6 years ago by ▴ 190
1
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0
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1.9k
views
Job: PhD position - Heidelberg: Bioinformatic analysis of high-throughput and image-based RNAi screening data
high-throughput screening RNAi image analysis data integration visualization Job
9.1 years ago e.schmidt ▴ 10
1
vote
0
replies
945
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SIM new package for Statistical Integration of Microarrays
SNP Microarray Visualization Cancer SNP Microarray Visualization Cancer
15.6 years ago Maarten van Iterson ▴ 60
1
vote
1
reply
1.1k
views
News: SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGNview pathways SBGNview.data pathview visualization
3.2 years ago Luo Weijun ★ 1.6k
1
vote
2
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1.2k
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 5.5 years ago by ▴ 20 • written 5.5 years ago by • 0
1
vote
3
replies
1.7k
views
copy number variation analysis (CNV)
copynumber plot visualization NGS gene
updated 3.4 years ago by ▴ 200 • written 3.5 years ago by • 0
1
vote
3
replies
1.9k
views
Visualizing gene counts and variance stabilization
deseq2 rnaseq variancestabilizingtransformation visualization
updated 8.9 years ago by 41k • written 8.9 years ago by ▴ 40
1
vote
0
replies
1.5k
views
News: BioCAsia, 4th November 2016, Brisbane, Australia
conference transcription epigenomics visualization infrastructure News
7.8 years ago Matthew Ritchie ▴ 1000
1
vote
1
reply
1.4k
views
Visualizing Structural variants
visualization SV
updated 9.0 years ago by 6.7k • written 9.0 years ago by ▴ 190
1
vote
1
reply
2.3k
views
Using DESeq2: experimental design and extracting results
Visualization DESeq DESeq2 Visualization DESeq DESeq2
updated 9.8 years ago by 41k • written 9.8 years ago by ▴ 60
1
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0
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1.7k
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Pathview and GAGE now work with essentially all KEGG species
Visualization gage pathview Visualization gage pathview
10.5 years ago Luo Weijun ★ 1.6k
1
vote
2
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2.7k
views
gene expression visualization: lineplot with ggplot2
ggplot2 lineplot visualization
updated 8.9 years ago by ▴ 180 • written 8.9 years ago by ▴ 130
0
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0
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1.3k
views
visualizing limma results
Visualization limma Visualization limma
18.3 years ago daniela.marconi@libero.it ▴ 100
0
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0
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826
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Bug in maNormNN
Microarray Normalization GO Visualization Network nnNorm Microarray Normalization GO
18.5 years ago Tarca, Adi ▴ 570
0
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1
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1.0k
views
Several questions goCluster and GOstats...
Annotation GO Visualization Yeast goCluster Annotation GO Visualization Yeast goCluster
updated 18.7 years ago by ▴ 60 • written 18.7 years ago by ▴ 140
0
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0
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722
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last call, registrations for Boston Bioconductor Training, 21-23 July 2005
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
18.8 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.0k
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Conference announcement: Compstat 2004
Visualization Bayesian Classification Clustering Regression Visualization Bayesian
20.6 years ago Wolfgang Huber ★ 13k
0
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0
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1.2k
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Bioconductor 2.9 is released
Transcription Sequencing miRNA qPCR Proteomics Annotation Normalization Visualization cdf
12.5 years ago Dan Tenenbaum ★ 8.2k
0
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1
reply
719
views
comparative genomics
Visualization Visualization
updated 18.9 years ago by 21k • written 18.9 years ago by ▴ 30
0
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0
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700
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Boston Bioc Training July 2005 Registration open
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
18.9 years ago Vincent J. Carey, Jr. 6.7k
0
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0
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1.3k
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InfoVis 2003 Call for Papers
Visualization PROcess Category Visualization PROcess Category
21.3 years ago rgentleman ★ 5.5k
0
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0
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794
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Bioc Training: 21-23 July 2005, Boston
Annotation Preprocessing Visualization Annotation Preprocessing Visualization
19.0 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
1.0k
views
status of visnab
Visualization ggbio Gviz Visualization ggbio Gviz
updated 11.0 years ago by ▴ 420 • written 11.0 years ago by ▴ 410
0
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2
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904
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ANN: Bioconductor short course June 1-3 in Seattle
Preprocessing Visualization Cancer Preprocessing Visualization Cancer
19.1 years ago Seth Falcon ★ 7.4k
0
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0
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1.1k
views
qPCR 2009 Event Agenda Online
SNP qPCR Normalization Visualization Regression Cancer probe microRNA SNP qPCR Cancer
15.2 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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0
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974
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in case you have a visualization paper to submit
Microarray Alignment Pathways Visualization Microarray Alignment Pathways Visualization
17.2 years ago Vincent J. Carey, Jr. 6.7k
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
0
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1
reply
2.0k
views
Entrez Gene ID to Probe Set Name
aCGH Sequencing miRNA Microarray Annotation Normalization GO Preprocessing Visualization
updated 15.5 years ago by ★ 7.2k • written 15.5 years ago by ▴ 300
0
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0
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606
views
Problem loadin repsTools
Visualization affy Visualization affy
19.1 years ago Zhi-Wei Lu ▴ 10
0
votes
1
reply
844
views
Visualization of multiple alignments in bioconductor
Genetics Visualization Genetics Visualization
updated 15.8 years ago by 25k • written 15.8 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Color in the lefs of a dendrogram?
Visualization Clustering Visualization Clustering
updated 19.5 years ago by ▴ 330 • written 19.5 years ago by ▴ 270
0
votes
0
replies
1.2k
views
Talk & Poster Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.5 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
1
reply
1.4k
views
Talk & Poster - Final Call - qPCR 2009 Event
SNP qPCR Normalization Visualization Regression Cancer probe PROcess microRNA SNP qPCR
15.4 years ago qPCR Platform - the reference in real-t… ▴ 170
0
votes
0
replies
1.3k
views
job advertisement
Genetics Alignment Visualization Genetics Alignment Visualization
10.8 years ago Zhenyu Xu ▴ 10
50 results • Page 1 of 1
Recent ...
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Comment: Deseq2 and Normalization of RNA sequencing data by ATpoint ★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq by ATpoint ★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position) by Yveto • 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Answer: More regions in union when increasing DBA$config$mergeOverlap by Rory Stark ★ 5.2k
I think the documentation is out of sync with the code. Positive values represent gaps between intervals and negative values represent how …
Comment: log2FoldChange value is way too different when compared with counts(dds) by Michael Love 41k
But just to be clear, this is not the same as regressing out batch from the VST (approx log transformed): ``` limma::removeBatchEffect(cou…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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