Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
1
vote
2
replies
716
views
DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
19 days ago • updated 10 days ago
ussarizona
▴ 10
0
votes
1
reply
135
views
covariate with negative and positive values
DESeq2
updated 18 days ago by
Michael Love
42k • written 20 days ago by
Brynn
• 0
0
votes
1
reply
150
views
DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 19 days ago by
ATpoint
★ 4.1k • written 19 days ago by
quanah.hudson
• 0
1
vote
2
replies
220
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
19 days ago • updated 18 days ago
Le
• 0
1
vote
2
replies
159
views
Error in champ.load(): The following specified files do not exist
ChAMP
19 days ago • updated 18 days ago
Sherin
• 0
0
votes
1
reply
101
views
Input Question for deseq.r
RSeqAn
updated 19 days ago by
ATpoint
★ 4.1k • written 19 days ago by
Nina
• 0
0
votes
4
replies
240
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
19 days ago • updated 17 days ago
lonn
• 0
0
votes
7
replies
323
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
20 days ago • updated 14 days ago
hortense96
• 0
0
votes
0
replies
84
views
News:
Services
flowBeads
20 days ago
creativepeptides2018
• 0
0
votes
0
replies
83
views
Enzyme Engineering
BioTIP
20 days ago
bocchemistry
• 0
0
votes
0
replies
83
views
News:
TIDES USA 2024
flowBeads
20 days ago
bocsci11
• 0
0
votes
0
replies
94
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
20 days ago
Maliha Tabassum
• 0
0
votes
4
replies
195
views
flowStats Search Error
flowStats
updated 20 days ago by
shepherl
3.9k • written 21 days ago by
tholmes
• 0
3
votes
18
replies
2.9k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 19 days ago
shepherl
3.9k
0
votes
1
reply
142
views
SNP locus package for mouse?
SNPlocs
packFinder
updated 20 days ago by
James W. MacDonald
65k • written 23 days ago by
tian.liu0720
• 0
1
vote
2
replies
142
views
geneList error in clusterprofiler
clusterProfiler
GeneSetEnrichment
20 days ago
Ana
• 0
0
votes
5
replies
1.7k
views
blockwiseModule crashes in the end and doesn't generate modules
WGCNA
written 13 months ago by
mauricio.microbiol
• 0
0
votes
1
reply
123
views
what is the sampleFiles
chipseq
updated 20 days ago by
James W. MacDonald
65k • written 21 days ago by
zhulin
• 0
1
vote
1
reply
187
views
Differentially expressed genes in monocle pseudotime
monocle
updated 21 days ago by
Gordon Smyth
50k • written 23 days ago by
kthapa
• 0
4
votes
8
replies
400
views
Memory errors using read.bismark?
dmrseq
bsseq
updated 18 days ago by
Peter Hickey
▴ 740 • written 26 days ago by
Juan Higareda
• 0
3
votes
3
replies
212
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
25 days ago • updated 19 days ago
jacques.imbert
• 0
0
votes
1
reply
145
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 21 days ago by
kamryncole1963
• 0 • written 26 days ago by
Sara
• 0
0
votes
3
replies
207
views
Interaction Terms in DESeq2 - Shrinkage
DESeq2
updated 20 days ago by
Michael Love
42k • written 21 days ago by
andrebolerbarros
▴ 20
0
votes
0
replies
96
views
Diffbind Error in socketConnection
DiffBind
Errorinsocketconnection
SpikeIn
21 days ago
Virangika
• 0
0
votes
0
replies
72
views
[ChIPseeker] Unable to perform gene ontology analysis
ChIPseeker
21 days ago
Henry
▴ 10
1
vote
2
replies
245
views
How to retrieve detailed regression results from deseq2
DESeq2
26 days ago • updated 17 days ago
Weiqian
▴ 10
0
votes
4
replies
270
views
DEG with low counts
DESeq2
updated 18 days ago by
Michael Love
42k • written 22 days ago by
Rajat
• 0
1
vote
2
replies
539
views
GSVA error
GSVA
23 days ago • updated 21 days ago
Alex
• 0
2
votes
3
replies
328
views
ComplexHeatmap: add pch to rowAnnotation when the input is a data frame with variable number of continuous columns
ComplexHeatmap
22 days ago • updated 21 days ago
daniel.carbajo
• 0
3
votes
3
replies
339
views
permutation test in edgeR
rna-seq
edgeR
updated 16 days ago by
Gordon Smyth
50k • written 29 days ago by
Netanel
• 0
1
vote
3
replies
352
views
Why is my gene not significantly differentially expressed?
limmaGUI
edgeR
limma
updated 22 days ago by
Gordon Smyth
50k • written 27 days ago by
Simran
• 0
0
votes
1
reply
133
views
Deseq2 Rlog transformation
DESeq2
updated 22 days ago by
ATpoint
★ 4.1k • written 23 days ago by
Sahar
• 0
0
votes
1
reply
709
views
Query regarding phyloseq object construct with QIIME output
phyloseq
microbiome
Metagenomics
updated 24 days ago by
President Gamer
• 0 • written 11 months ago by
abhisek001
• 0
1
vote
2
replies
198
views
Design Matrix within group comparison more than two groups
DESeq2
24 days ago
hemantcnaik
• 0
2
votes
2
replies
194
views
How many of my genes from my gene list are in each KEGG pathway?
Pathways
clusterProfiler
gseKEGG
KEGG
24 days ago
julia_mcdonough
• 0
2
votes
2
replies
172
views
[DiffBind] Obtaining normalization factors
DiffBind
24 days ago • updated 21 days ago
Henry
▴ 10
0
votes
1
reply
135
views
Bioinformatics student
Des
DESeq2
updated 24 days ago by
hemantcnaik
• 0 • written 24 days ago by
Sahar
• 0
0
votes
0
replies
85
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
24 days ago
shepherl
3.9k
2
votes
2
replies
174
views
ComplexHeatmap: change the names of a HeatmapAnnotation object
ComplexHeatmap
25 days ago • updated 22 days ago
daniel.carbajo
• 0
0
votes
3
replies
258
views
A ComBat-seq issue: the covariates are confounded
ComBat-seq
sva
updated 18 days ago by
W. Evan Johnson
▴ 850 • written 25 days ago by
schlumbohm
• 0
5
votes
9
replies
930
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
26 days ago • updated 18 days ago
Chris
• 0
0
votes
0
replies
92
views
Cannot use `readVcf()` on a file created with `writeVcf()`
VariantAnnotation
25 days ago
Stevie Pederson
• 0
2
votes
2
replies
392
views
[Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Blacklist/Greylist
DiffBind
Normalization
25 days ago • updated 24 days ago
Henry
▴ 10
0
votes
4
replies
228
views
Storing directories inside an ExperimentHub package?
ExperimentHub
26 days ago • updated 25 days ago
Tim Barry
• 0
0
votes
0
replies
101
views
News:
Course Manipulation of NGS Data for Genomic and Population Genetics Analyses
sequencing
Sequencing
SequencingData
26 days ago
communication
• 0
3
votes
6
replies
277
views
Surrogate variable analysis for paired RNA seq experiment
RUVSeq
sva
26 days ago • updated 25 days ago
nhaus
▴ 30
0
votes
1
reply
178
views
DESeq2 gives an error and R crashes
DESeq2
26 days ago • updated 25 days ago
Shefali
• 0
0
votes
0
replies
135
views
LearnTaxa with custom Silva
DECIPHER
LearnTaxa
26 days ago
Eryn
• 0
0
votes
0
replies
87
views
queryDGIdb lexical error for some genes
lexicalerror
rDGIdb
DGIdb
json
26 days ago
Dennis
• 0
0
votes
1
reply
161
views
compareCluster dotplot: how to modify the genesets order
DOSE
enrichplot
clusterProfiler
updated 22 days ago by
Guido Hooiveld
★ 3.9k • written 26 days ago by
Lucie
• 0
45,627 results • Page
3 of 913
Recent ...
Replies
Answer: Recovering my account credentials on Bioconductor
by
shepherl
3.9k
As we will need to exchange some information can you please contact me at bioconductorcoreteam@gmail.com and I can better assist you. Che…
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
by
Hervé Pagès
16k
Indeed. Calculations involving floating point arithmetic are architecture-dependent, and testing the results should be done with `all.equal…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
I will follow what you suggested. I didn't use max gap anywhere. I was following statistic I and regarding the size of features, my small…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Oh I see, for the second question, I don't have a great answer. I typically think of one set as the anchor, whose ascertainment is driving …
Comment: Help with running egsea()
by
James W. MacDonald
65k
Oh, right. Ideally you would use NCBI (aka Entrez gene) IDs because they are way more likely to be unique. Gene symbols are broken down int…
Votes
Answer: How to save the DEXSeq results
Answer: minfi support of illumina Infinium methylationEPIC v2.0
Comment: minfi support of illumina Infinium methylationEPIC v2.0
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Help with running egsea()
Awards
• All
Popular Question
to
Gordon Smyth
50k
Popular Question
to
WouterDeCoster
▴ 130
Scholar
to
Michael Love
42k
Popular Question
to
Malcolm Cook
★ 1.6k
Popular Question
to
priyanka.m
• 0
Locations
• All
France,
2 minutes ago
WEHI, Melbourne, Australia,
8 minutes ago
Switzerland,
11 minutes ago
United States,
17 minutes ago
United States,
20 minutes ago
Traffic: 667 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6