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6
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12
replies
5.1k
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BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 24 days ago
shepherl
3.9k
3
votes
2
replies
229
views
Cannabis and KEGGgraph
KEGGREST
GenomicDistributionsData
KEGGgraph
KEGG
updated 25 days ago by
Guido Hooiveld
★ 4.0k • written 27 days ago by
fernanda.backsouza
▴ 10
0
votes
2
replies
236
views
RNAseq:Technical replicates from different batches
technicalReplicates
BatchEffect
limma
RNASeq
27 days ago • updated 25 days ago
catv
• 0
0
votes
0
replies
94
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
26 days ago
vaxahey107
• 0
3
votes
3
replies
366
views
permutation test in edgeR
rna-seq
edgeR
updated 26 days ago by
Gordon Smyth
50k • written 5 weeks ago by
Netanel
• 0
0
votes
18
replies
2.6k
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
written 3.2 years ago by
lea
• 0
0
votes
0
replies
105
views
I am trying to detect alternative splicing.
ASpli
26 days ago
Sebashish
• 0
3
votes
1
reply
1.5k
views
Job:
Post Doctoral position in AI (Deep learning / Machine learning) approaches for Cancer Research, MRC Cancer Unit, University of Cambridge, UK
job
Job
machine learning
deep learning
computational biology
written 6.3 years ago by
Shamith.Samarajiwa
▴ 180
0
votes
2
replies
817
views
Job:
Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor
artificialintelligence
JobPosting
machinelearning
written 8 months ago by
Gordon Smyth
50k
0
votes
4
replies
262
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
29 days ago • updated 27 days ago
lonn
• 0
1
vote
2
replies
262
views
How to retrieve detailed regression results from deseq2
DESeq2
5 weeks ago • updated 27 days ago
Weiqian
▴ 10
1
vote
0
replies
344
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
27 days ago
BioinfGuru
▴ 30
0
votes
7
replies
445
views
DESeq filtering specific to contrasts
DESeq2
updated 27 days ago by
Michael Love
42k • written 3 months ago by
Emma
• 0
0
votes
2
replies
279
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
6 weeks ago • updated 27 days ago
isaac.vock
• 0
0
votes
3
replies
173
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 27 days ago by
James W. MacDonald
65k • written 27 days ago by
bas_work
▴ 30
2
votes
5
replies
789
views
DESeq2 setting significant p-value
DESeq2
updated 27 days ago by
Michael Love
42k • written 5.0 years ago by
Merlin
▴ 10
2
votes
2
replies
209
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 27 days ago by
James W. MacDonald
65k • written 28 days ago by
sansan
• 0
6
votes
10
replies
1.7k
views
Which input file is used for DGEList in EgdeR?
salmon
edgeR
tximport
nf-core
gene_counts
updated 27 days ago by
i.atanasoai
• 0 • written 15 months ago by
mohammedtoufiq91
▴ 10
0
votes
4
replies
291
views
DEG with low counts
DESeq2
updated 28 days ago by
Michael Love
42k • written 4 weeks ago by
Rajat
• 0
6
votes
5
replies
474
views
Estimating Cell Counts for EPIC V2 array data
FlowSorted.Blood.EPIC
minifi
written 11 weeks ago by
Kim
• 0
0
votes
3
replies
208
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 28 days ago by
Gordon Smyth
50k • written 28 days ago by
prity6459
• 0
0
votes
2
replies
146
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
28 days ago
prity6459
• 0
0
votes
2
replies
928
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.3 years ago by
araaaju
• 0
11
votes
5
replies
7.4k
views
Theoretical WGCNA Question
WGCNA
Theory
Scale-Free Topology
updated 28 days ago by
Garrett
• 0 • written 9.1 years ago by
brohawndg
▴ 150
0
votes
4
replies
215
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
28 days ago
sropri
• 0
1
vote
2
replies
233
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
29 days ago • updated 28 days ago
Le
• 0
0
votes
3
replies
279
views
A ComBat-seq issue: the covariates are confounded
ComBat-seq
sva
updated 28 days ago by
W. Evan Johnson
▴ 850 • written 5 weeks ago by
schlumbohm
• 0
0
votes
0
replies
132
views
Warning while loading DEP package
DEP
updated 28 days ago by
shepherl
3.9k • written 28 days ago by
Namrata
• 0
0
votes
1
reply
165
views
Adding columns to DEXSeqResults object
DEXSeq
updated 28 days ago by
Alejandro Reyes
★ 1.9k • written 4 weeks ago by
Clyde
• 0
0
votes
1
reply
154
views
rlog transformation
DESeq2
updated 28 days ago by
Michael Love
42k • written 29 days ago by
ishij9717
• 0
0
votes
1
reply
124
views
ONT long-read RNA sequencing - data analysis options
DESeq2
LongRead
DEXSeq
IsoformSwitchAnalyzeR
RNASeq
updated 28 days ago by
Michael Love
42k • written 29 days ago by
09191919
• 0
0
votes
1
reply
149
views
covariate with negative and positive values
DESeq2
updated 28 days ago by
Michael Love
42k • written 4 weeks ago by
Brynn
• 0
1
vote
2
replies
176
views
Error in champ.load(): The following specified files do not exist
ChAMP
29 days ago • updated 28 days ago
Sherin
• 0
9
votes
12
replies
7.9k
views
Multi factor design edgeR/Deseq2
deseq2
edgeR
rna-seq
updated 28 days ago by
Elizabeth
• 0 • written 8.9 years ago by
gthm
▴ 30
5
votes
9
replies
973
views
Light difference when using coef vs omit a group when compare 3 groups.
limma
5 weeks ago • updated 28 days ago
Chris
▴ 10
0
votes
1
reply
109
views
Input Question for deseq.r
RSeqAn
updated 29 days ago by
ATpoint
★ 4.1k • written 29 days ago by
Nina
• 0
0
votes
1
reply
164
views
DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 29 days ago by
ATpoint
★ 4.1k • written 29 days ago by
quanah.hudson
• 0
3
votes
3
replies
244
views
Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array
BiocGenerics
BiocParallel
Biobase
4 weeks ago • updated 29 days ago
jacques.imbert
• 0
5
votes
9
replies
1.3k
views
Batch correction and repeated measures
RUVSeq
sva
limma
updated 29 days ago by
Gordon Smyth
50k • written 7 months ago by
Jonathan
▴ 10
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 29 days ago
shepherl
3.9k
0
votes
2
replies
949
views
Single-Cell Data Simulation from Bulk RNA-seq
SingleCell
RNASeq
RNASeqData
scRNAseq
updated 29 days ago by
wichaidi
• 0 • written 18 months ago by
irvin.ng
• 0
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 29 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
2
votes
5
replies
1.2k
views
DESeq2 remove batch effect
BatchEffect
RNASeqData
WGCNA
DESeq2
updated 29 days ago by
Ashley
• 0 • written 11 months ago by
zxc741xb
• 0
0
votes
0
replies
94
views
News:
Services
flowBeads
4 weeks ago
creativepeptides2018
• 0
0
votes
0
replies
90
views
Enzyme Engineering
BioTIP
4 weeks ago
bocchemistry
• 0
0
votes
0
replies
94
views
News:
TIDES USA 2024
flowBeads
4 weeks ago
bocsci11
• 0
0
votes
0
replies
105
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
4 weeks ago
Maliha Tabassum
• 0
0
votes
4
replies
628
views
How to correct for known and surrogate variables in DESeq2?
DESeq2
BatchEffect
sva
limma
updated 4 weeks ago by
Michael Love
42k • written 6 months ago by
Crystal571
• 0
0
votes
4
replies
216
views
flowStats Search Error
flowStats
updated 4 weeks ago by
shepherl
3.9k • written 4 weeks ago by
tholmes
• 0
0
votes
1
reply
152
views
SNP locus package for mouse?
SNPlocs
packFinder
updated 4 weeks ago by
James W. MacDonald
65k • written 4 weeks ago by
tian.liu0720
• 0
1,738 results • Page
4 of 35
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Comment: Error while installing BiocManager::install("org.Vdahliae.eg.db")
by
Patadù
▴ 10
Hi @marcelramos Thanks for the clarification. Yes, I have installed `org.Vdahlaie.eg.db` using the code you and Guido suggested and now i…
Comment: European Bioconductor Conference 2023 planning
by
angelaesper43
• 0
@Maria Doyle[sexdolltech][1]Hosting EuroBioC provides an excellent opportunity to showcase Bioconductor and computational biology research …
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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