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135
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putting my own expression data in deseq2
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22 days ago • updated 21 days ago pl23 • 0
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minfi::read.metharray.exp
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updated 23 days ago by 42k • written 23 days ago by ▴ 20
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3
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328
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updated 23 days ago by 42k • written 24 days ago by ▴ 40
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Which input file is used for DGEList in EgdeR?
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5
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16 days ago • updated 15 days ago kcarey • 0
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16 days ago • updated 15 days ago Yveto • 0
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97
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rlog transformation
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3
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273
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29 days ago sropri • 0
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4 weeks ago • updated 21 days ago Patadù ▴ 10
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NEED FOR NESSASORY HELP
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23 days ago • updated 21 days ago winwater0928 • 0
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fgsea significant result
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3
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updated 16 days ago by 42k • written 17 days ago by • 0
2
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2
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268
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error in limma , contrast.matrix Number of rows of contrast matrix must match number of coefficients in fit
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10 days ago • updated 4 days ago zzrammal • 0
3
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How to save the DEXSeq results
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updated 11 days ago by 42k • written 11 days ago by • 0
192 results • Page 2 of 4
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Comment: STRINGdb : error with string_db$plot_network() by ninidea • 0
> Does the vignette produce the same error? No. Anyway, I finally solved the problem. I don't know why, but I removed: protocol='http' fr…
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Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
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Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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