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20
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DESeq2 question: why I got discrepancy results for DEGs when using different ways setting up the models
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4.5 years ago • updated 4.4 years ago Ming ▴ 380
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4.5 years ago • updated 4.4 years ago efoss ▴ 10
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updated 4.5 years ago by ▴ 20 • written 4.5 years ago by ▴ 10
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deseq2 for TCGA tumor/normal paired sample from multiple patients
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updated 4.5 years ago by 43k • written 10.2 years ago by • 0
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importing RSEM isoform to Gene Name with tximport
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updated 4.5 years ago by 68k • written 4.5 years ago by ▴ 50
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4.5 years ago hxwanghxw • 0
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DiffBind dba.report(): Question about DBA_ALL_METHODS
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4.5 years ago etiennedanis • 0
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undefined columns selected
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Processing Nanostring GeoMX Q3 normalized data as intensities with Limma
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updated 4.4 years ago by • 0 • written 4.5 years ago by ▴ 390
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error in file(file, "rt") when reading in sample sheet using DESeqDataSetFromHTSeqCount
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4.5 years ago Yihan • 0
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How to sort out error in gdcCEAnalysis function of GDCRNATools R package?
GDCRNATools
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
3
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R NanoStringDiff: DE analysis, from 2 group comparison method how "logFC" generated?
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4.5 years ago choijamts • 0
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2
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Error: $ operator is invalid for atomic vectors
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4.5 years ago Ofelia • 0
1
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3
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subset a list based on table
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updated 4.5 years ago by ★ 5.0k • written 4.5 years ago by • 0
3
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16
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DESeq2 - groups with biological replicates from the same patient
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updated 24 months ago by 4.3k • written 4.5 years ago by ▴ 10
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4
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estimateSizeFactors throws "Error in .local(object, ..., value) : all(!is.na(value)) is not TRUE". Identified root cause within estimateSizeFactorsFo…
DESeq2
4.5 years ago alawrence2211 • 0
3
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Clarification re VST transformed data in DESeq2
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updated 4.5 years ago by ★ 5.0k • written 4.5 years ago by • 0
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extract fold change of a list of gene from EdgeR?
EdgeR RNAseq Foldchange
updated 4.5 years ago by ★ 1.4k • written 4.5 years ago by • 0
1
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Installing hdf5r without admin access
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updated 4.5 years ago by 16k • written 4.5 years ago by • 0
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4.5 years ago rohitghosh • 0
1
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5
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featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
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updated 2.5 years ago by ▴ 450 • written 4.5 years ago by ▴ 10
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0
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680
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gpuMagic with NVIDIA GeForce?
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4.5 years ago Andrew • 0
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2
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How to fix .bam file that was diagnosed as "MISSING_READ_GROUP" by Picard ValidateSamFile
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4.5 years ago Michal ▴ 10
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EnsDb.Mmusculus.v79 : Failed to switch to UCSC style
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updated 4.5 years ago by ▴ 10 • written 4.5 years ago by • 0
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News: Bioconductor 2021 Scholarship and Caregiver Awards
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How are greylists derived in DiffBind
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Questions regard to GSVA and Limma
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Turn of GSVA filtering for method ssGSEA
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4.5 years ago k.vitting.seerup ▴ 120
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DESseq2 question about VST and rlog
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updated 4.5 years ago by ★ 5.0k • written 4.5 years ago by • 0
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7
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4.5 years ago erik.burchard • 0
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2
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updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
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Error of read in large vcf file using readVcf
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updated 4.5 years ago by 68k • written 4.5 years ago by • 0
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4.5 years ago rtrivedi1 ▴ 10
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4.5 years ago mike_flower • 0
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estimateSizeFactors before or after removing non-coding genes and filtering for low counts
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updated 4.5 years ago by 43k • written 4.5 years ago by • 0
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Differentially expressed genes across three different conditions
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updated 4.5 years ago by 68k • written 4.5 years ago by • 0
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4.5 years ago Pete • 0
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3
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Adding insect abundance data to SparCC Analysis
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updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by • 0
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Tool for simulating bulk RNA-Seq from single cell data
scRNAseq
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
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How to write a script for identifying associate gene id
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4.5 years ago • updated 3.1 years ago abhisek001 • 0
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