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DEseq2 coefficient
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11 weeks ago • updated 10 days ago JKim • 0
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updated 3 days ago by ★ 6.5k • written 6 days ago by • 0
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updated 25 days ago by 42k • written 6 months ago by • 0
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DEG with low counts
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17 days ago • updated 15 days ago winwater0928 • 0
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EGSEA usage with microarray data (with vooma)?
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graphite
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[Mfuzz] Error in cmeans(exprs(eset)
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updated 5 days ago by • 0 • written 13.1 years ago by ▴ 720
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Interaction Terms in DESeq2 - Shrinkage
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updated 25 days ago by 42k • written 26 days ago by ▴ 20
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updated 11 days ago by 65k • written 12 days ago by • 0
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Differences in differential analysis methods for RNA-Seq
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updated 9 days ago by ★ 4.1k • written 10 days ago by • 0
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DEXSeq
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permutation test in edgeR
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Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 22 days ago by 65k • written 22 days ago by ▴ 30
3
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DESeq2 - dispersion estimation when there is none
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updated 18 days ago by 42k • written 19 days ago by • 0
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Log-cpm values from limma
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updated 2 days ago by 50k • written 23 days ago by • 0
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3
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log2FoldChange value is way too different when compared with counts(dds)
DESeq2
updated 10 days ago by 42k • written 11 days ago by • 0
1
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Different Shrunk Log2FC according with reference
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updated 17 days ago by 42k • written 17 days ago by ▴ 20
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SingleR Label.Ont
SingleR
updated 17 hours ago by • 0 • written 7 months ago by • 0
1
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3
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356
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Why is my gene not significantly differentially expressed?
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updated 26 days ago by 50k • written 4 weeks ago by • 0
3
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253
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DESeq2: Contrast for two conditions combined versus one condition (A+B_vs_C)
DESeq2 contrasts
updated 12 days ago by ★ 4.1k • written 13 days ago by ▴ 10
2
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27 days ago • updated 25 days ago daniel.carbajo • 0
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Too many significant genes when integrating gtex and tcga
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updated 6 days ago by ★ 4.1k • written 8 days ago by • 0
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package goseq seems to be not available on the latest version of R
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Store output of matchPWM()
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29 days ago • updated 23 days ago jacques.imbert • 0
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3
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238
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Deseq2. decontXcounts not integers. Useful alternative?
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updated 15 days ago by 42k • written 16 days ago by • 0
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Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
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fgsea significant result
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7 days ago • updated 6 days ago Chris • 0
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9 days ago • updated 5 days ago gene_bioconductor ▴ 10
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Timecourse RNASeq analysis
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11 days ago • updated 8 days ago Aurora • 0
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Error in champ.load(): The following specified files do not exist
ChAMP
24 days ago • updated 23 days ago Sherin • 0
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GSVA error
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27 days ago • updated 26 days ago Alex • 0
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17 days ago • updated 16 days ago ATpoint ★ 4.1k
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How many of my genes from my gene list are in each KEGG pathway?
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29 days ago julia_mcdonough • 0
2
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2
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ComplexHeatmap: change the names of a HeatmapAnnotation object
ComplexHeatmap
29 days ago • updated 27 days ago daniel.carbajo • 0
1
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2
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Improving the design matrices vignette in RNAseq123
RNAseq123
19 days ago • updated 5 days ago Lluís Revilla Sancho ▴ 730
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DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
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24 days ago • updated 15 days ago ussarizona ▴ 10
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Single-Cell Data Simulation from Bulk RNA-seq
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updated 24 days ago by • 0 • written 18 months ago by • 0
1
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How to retrieve detailed regression results from deseq2
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4 weeks ago • updated 22 days ago Weiqian ▴ 10
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RNAseq:Technical replicates from different batches
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22 days ago • updated 19 days ago catv • 0
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Deseq2 and Normalization of RNA sequencing data
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10 days ago • updated 9 days ago kcarey • 0
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193 results • Page 2 of 4
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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ziliang • 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont by Denis • 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results by sajadahmad41454 • 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
Votes
A: AIC-like measure for DESeq2
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
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