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Spam:
Unveiling Unmatched Best Custom Patches
SIMAT
17 hours ago
oliverelijhan
0
0
votes
0
replies
132
views
Warning while loading DEP package
DEP
updated 28 days ago by
shepherl
3.9k • written 28 days ago by
Namrata
• 0
0
votes
1
reply
108
views
Input Question for deseq.r
RSeqAn
updated 28 days ago by
ATpoint
★ 4.1k • written 29 days ago by
Nina
• 0
0
votes
0
replies
115
views
dba.plotProfile() plotting and interpretation
DiffBind
13 days ago
Henry
▴ 10
1
vote
2
replies
233
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
28 days ago
Le
• 0
2
votes
7
replies
353
views
deseq2 results
DESeq2
DifferentialExpression
rnaseqGene
DifferentialRegulation
8 days ago • updated 5 days ago
sajadahmad41454
• 0
0
votes
0
replies
99
views
how to do Differential splicing from SGSeq analysis
DEXSeq
SGSeq
22 days ago • updated 17 days ago
Sara
• 0
0
votes
3
replies
209
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 14 days ago by
ATpoint
★ 4.1k • written 15 days ago by
james.zhang20
• 0
0
votes
0
replies
133
views
Empty table plot using plotGseaTable()
fgsea
15 days ago • updated 13 days ago
Chris
▴ 10
4
votes
0
replies
130
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
15 days ago
shepherl
3.9k
1
vote
2
replies
155
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
3 days ago • updated 9 hours ago
BioinfGuru
▴ 30
0
votes
0
replies
105
views
I am trying to detect alternative splicing.
ASpli
26 days ago
Sebashish
• 0
0
votes
0
replies
95
views
flowStats for CyTOF
flowStats
14 days ago
tholmes
• 0
0
votes
0
replies
25
views
ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
16 hours ago
Shaimaa Gamal
• 0
0
votes
1
reply
52
views
Retrieving ceRNA data from the starBase or ENCORI Web API
microRNA
starBase
ceRNA
WebAPI
ENCORI
2 days ago • updated 1 day ago
Bhavya
• 0
0
votes
0
replies
41
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
3 days ago
Researcher
• 0
0
votes
2
replies
278
views
Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
featureCounts
Rsubread
6 weeks ago • updated 27 days ago
isaac.vock
• 0
0
votes
2
replies
264
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
24 days ago • updated 21 days ago
shuwangxinze1996
• 0
0
votes
0
replies
92
views
Could we detect difference at pathway level but not significant different at gene level?
GSVA
17 days ago
Chris
▴ 10
0
votes
1
reply
1.3k
views
DSS CpG coverage threshold
DSS
WGBS
coverage
updated 7 days ago by
j.gilbert
• 0 • written 6.6 years ago by
floriandeckert
▴ 30
1
vote
3
replies
886
views
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
clusterProfiler
RNASeq
updated 22 days ago by
Guangchuang Yu
★ 1.2k • written 14 months ago by
ruiqi.li
▴ 10
0
votes
0
replies
92
views
News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
16 days ago
Maria Doyle
▴ 70
0
votes
3
replies
136
views
ChAMP installation issue
Cha
ChAMP
4 days ago • updated 2 days ago
e1271094
• 0
0
votes
0
replies
65
views
Treeio as.treedata function seq lenght error
treeio
9 days ago
nromerov
• 0
1
vote
7
replies
1.8k
views
Error using champ.import
ChAMP
EPICv2
updated 29 days ago by
shilpa
• 0 • written 10 months ago by
medha.suman
• 0
0
votes
0
replies
26
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
1 day ago
k200987
• 0
0
votes
0
replies
88
views
DiffBind: no peaks in DBA object
DiffBind
macs2
chipseq
14 days ago
yvonneh
• 0
0
votes
0
replies
93
views
News:
Services
flowBeads
29 days ago
creativepeptides2018
• 0
0
votes
1
reply
127
views
Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
written 14 days ago by
4r-rtg
• 0
1
vote
0
replies
44
views
News:
Ensembl 112 has been released.
ensembldb
biomaRt
ensemblrelease
2 days ago
Aleena
▴ 30
0
votes
0
replies
27
views
determine k during RUVSeq
RUVSeq
RUVnormalize
15 hours ago
Ειρήνη
• 0
1
vote
2
replies
176
views
Error in champ.load(): The following specified files do not exist
ChAMP
29 days ago • updated 28 days ago
Sherin
• 0
0
votes
0
replies
63
views
Recommendations on deploying cytoviewer shiny.appobj to shinyapps.io?
cytoviewer
ShinyApps
7 days ago
neilzhao
▴ 30
0
votes
0
replies
37
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
19 hours ago
Anton01
• 0
0
votes
0
replies
82
views
need help with Diffbind multiple groups
DiffBind
ChIPSeqData
10 days ago
Dinesh
• 0
2
votes
13
replies
475
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
25 days ago • updated 22 days ago
fernanda.backsouza
▴ 10
0
votes
4
replies
261
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
29 days ago • updated 26 days ago
lonn
• 0
0
votes
0
replies
97
views
Exon-exon Junction Analysis for Variable-length Exons
Rsubread
22 days ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
24
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
1 day ago
danalvoronov
▴ 10
1
vote
0
replies
314
views
News:
Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 2 days ago
shepherl
3.9k
0
votes
0
replies
25
views
Difference in Contrast in DiffBind
DiffBind
1 day ago
zzrammal
• 0
3
votes
1
reply
1.5k
views
Job:
Post Doctoral position in AI (Deep learning / Machine learning) approaches for Cancer Research, MRC Cancer Unit, University of Cambridge, UK
job
Job
machine learning
deep learning
computational biology
written 6.3 years ago by
Shamith.Samarajiwa
▴ 180
0
votes
0
replies
81
views
How to create consensus peak sets for each group to use in DiffBind?
DiffBind
14 days ago
Ian D.
▴ 70
0
votes
0
replies
141
views
One error problem occurred caused by data type during using GDCprepare function of TCGAbiolinks to handle TCGAbiolinks BRCA data
GDCRNATools
TCGA
21 days ago • updated 13 days ago
glaciya2018
• 0
194 results • Page
4 of 4
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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