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174
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IgG control in RIP-seq with Deseq2
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4 weeks ago Roope • 0
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How to make boxplot with pairwise and overall p value from Limma
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4 weeks ago Chris • 0
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Can you find the correct transcript in scRNA seq data
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4 weeks ago arne.sahm • 0
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News: Call for proposals: European CarpentryConnect - 12-14 November 2024, at EMBL Heidelberg
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4 weeks ago Wolfgang Huber ★ 13k
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permutation test in edgeR
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updated 20 days ago by 50k • written 4 weeks ago by • 0
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How can I create a GO plot with ggpubr and clusterProfiler libraries (begginer)
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Limma design matrix only showing 3/4 treatments?
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Help with design.matrix
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5 weeks ago andrea.rodriguez-martinez13 • 0
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updated 5 weeks ago by 65k • written 5 weeks ago by • 0
0
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Why output of GSEA is not the same but inversed, when you have the same but inversed input data?
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5 weeks ago andromeda • 0
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What to the log 2 fold changes mean using LRT on time course in DESeq2
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Interaction term vs grouping variable design considerations
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updated 4 weeks ago by 42k • written 5 weeks ago by ▴ 30
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Bluster and Varieties of Louvain Clulstering
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updated 5 weeks ago by ★ 4.1k • written 5 weeks ago by ★ 1.5k
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Granges regionCounts not returning the expected number of entries
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5 weeks ago Modoc Kesner ▴ 10
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5 weeks ago fredrikwallberg • 0
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DESeq2 - Missing values in count matrix
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DMRcate error need at least two non-NA values to interpolate
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5 weeks ago Macsue • 0
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CombineArrays for EPIC and EPIC V2
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5 weeks ago • updated 8 days ago Kim • 0
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DESeq2 step-by-step Normalization then DGE separately & Normalization methods and switchability
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Using a change in a continuous explanatory variable to test changes in gene expression with limma
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edgeR analysis: glm functions and offset matrix
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5 weeks ago Marianna ▴ 20
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voom(calcNormFactors()) for normalization of RNAseq counts for WGCNA
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5 weeks ago Gimena • 0
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Obtaining pheno data from CEL files
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5 weeks ago • updated 4 weeks ago Kurtis • 0
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164
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DESeq2 , filter and theta arguments in resutlts()
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5 weeks ago Layal • 0
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5 weeks ago michelafrancesconi8 • 0
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Multiple affymatrix IDs mapping to a single gene name
biomaRt
updated 5 weeks ago by 65k • written 5 weeks ago by • 0
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Abnormal Low Dispersion Gene Population in DESeq2
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updated 5 weeks ago by 65k • written 5 weeks ago by • 0
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5 weeks ago Lucy ▴ 60
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5 weeks ago Seongsu • 0
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updated 5 weeks ago by 65k • written 5 weeks ago by • 0
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Gene Ontology doubt
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5 weeks ago Bhawna • 0
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Error in if (nrow(peaks) > 0) { : argument is of length zero Calls: CopywriteR ... tryCatch -> tryCatchList -> tryCatchOne -> <Anonymous> Execution h…
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5 weeks ago fer_talavera • 0
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MethylKit read issue
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5 weeks ago • updated 22 days ago isaac.vock • 0
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Internet connection for Bioconductor packages in Rstudio in Iran...
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6 weeks ago • updated 5 weeks ago needNGS • 0
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Convert transcriptomic bam to genomic bam?
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15
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The difference when using Limma compare between 3 conditions vs 2 conditions
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6 weeks ago • updated 11 days ago Chris • 0
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Minfi - estimatecellscount
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updated 12 days ago by 65k • written 6 weeks ago by • 0
0
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How to extract the coordinate of dba.plotPCA?
DiffBind PCA
6 weeks ago feather-W • 0
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0
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PCA plot for normalized counts using Diffbind
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6 weeks ago Ankit ▴ 20
1
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5
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353
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fgsea fork
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updated 6 weeks ago by 65k • written 6 weeks ago by • 0
3
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Differing results from plotMDS and PCAtools
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0
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Doing comparison of RNA-seq data using EdgeR
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updated 6 weeks ago by 50k • written 6 weeks ago by • 0
45,636 results • Page 4 of 913
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Comment: More regions in union when increasing DBA$config$mergeOverlap by Ziliang • 0
I am so confused and frustrated learning to use this software. Isn't how you merge the peaksets one of the most important steps for the com…
Answer: SingleR Label.Ont by Denis • 0
[Jackpot City Casino][1] is the perfect option when looking for an online casino in Canada for an exciting vacation and huge winnings that …
Comment: deseq2 results by sajadahmad41454 • 0
thank you so much and sorry for bothering you again and again, it is urgent because it is my project deadline. i have removed that sample a…
Comment: deseq2 results by swbarnes2 ★ 1.4k
Ask the people who made the libraires if there was anything unusual in the QC of the outlier sample. Try to figure out what biologically …
Comment: Can't post a question containing code? by NATASHA • 0
did you find a solution? I´m having the same problem
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A: AIC-like measure for DESeq2
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