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34
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wgcna module preseravtion taking too long?
WGCNA
4 days ago lamia11me • 0
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0
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45
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Clarification on counting in Rsubread (featureCounts)
Rsubread
5 days ago Luca • 0
0
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1
reply
103
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Question about RE-agnostic mode for intact Hi-C and Micro-C normalization(HiCDCPlus)
HiC HiCDCPlus
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0
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PFAM formats changed - is it still possible to use this with ISA?
IsoformSwitchAnalyzeR
updated 11 hours ago by • 0 • written 25 days ago by • 0
0
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1
reply
168
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DECIPHER DesignProbes unable to design FISH-probes
decipher FISH DECIPHER FISH-probe probe-design
updated 13 days ago by ▴ 150 • written 25 days ago by • 0
3
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5
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452
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upstream git branches of bioc-release
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0
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1
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337
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org.Ss.eg.db MAMDC4 maps to incorrect UNIPROT key
MAMDC4 org.Ss.eg.db AnnotationDbi
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0
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1
reply
316
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GOseq Probability Weight Function bad fit
goseq
written 12 weeks ago by • 0
0
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2
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144
views
APAlyzer
APAlyzer
updated 4 weeks ago by ★ 4.0k • written 4 weeks ago by ▴ 10
0
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1
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2.0k
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Co-occurrence Network Analysis between Algae and Bacteria
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Y-axis break ihn Volcano Plot
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6 months ago rajdeepboral00 • 0
0
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0
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getQC(RGset.raw) from IlluminaHumanMethylationMSAmanifest
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updated 6 months ago by 4.2k • written 6 months ago by • 0
0
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0
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DiffBind plot.profile error
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6 months ago this_is_me_trying • 0
0
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1
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645
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Using EBI Image on Ranged Bar Chart
EBImage
written 7 months ago by • 0
1
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3
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1.2k
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Possible issue following the logNormCounts(filtered) with resulted fit
single-cell SingleCell SingleCellExperiment SingleCellWorkflow SingleCellData
7 months ago • updated 6 months ago Konstantinos Yeles ▴ 90
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2
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585
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GBCC2025: New Scholarship Opportunities Available!
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updated 4 months ago by • 0 • written 7 months ago by ▴ 110
0
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Blank gene_id in featureCounts
featureCounts Rsubread
7 months ago Meg • 0
0
votes
1
reply
559
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FCS 32 support going backwards?
flowCore
updated 6 months ago by • 0 • written 7 months ago by • 0
0
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0
replies
355
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What Input-type do I use in decouplR::run_viper?
decoupleR viper
updated 6 months ago by 43k • written 7 months ago by • 0
0
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0
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330
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Combining COMBAT-seq result (raw count) with other raw count
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7 months ago dudwnsrla1 • 0
0
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1
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538
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Can't install BioC packages (and manager) behind firewall
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updated 7 months ago by 700 • written 7 months ago by • 0
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Diffbind Analysis gives error during profile plotting stage. Error in value[[3L]](cond) : profileplyr error: Error: BiocParallel errors 1 remote…
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0
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1
reply
705
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Combat-seq usage
sva
7 months ago • updated 6 months ago bbao ▴ 10
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1
reply
418
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What happened to the Joost2016 dataset
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updated 7 months ago by 4.2k • written 7 months ago by • 0
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2
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FlowSOM is unable to create Output
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Discrepancies in normalised count data vs unnormalised
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7 months ago • updated 6 months ago AMgroup • 0
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0
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471
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Significant Probes and Genes differ in Probe and Region level Differential Methylation Analyses
limma probe DMRcate GenomicRanges DifferentialMethylation
7 months ago jamiecatalano2 • 0
0
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0
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381
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Batch correction for microarray
BatchEffect sva MicroarrayData
8 months ago Shaimaa Gamal • 0
0
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0
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216
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GRaNIE with no internet
GRaNIE
8 months ago maia.malonzo • 0
0
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0
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264
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Issue checking for convergence with the tutorial Dataset. EBseq 2.4.1
EBSeq
8 months ago Javier • 0
0
votes
0
replies
367
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I want my overlapping peaks to stop merging by default doing read counting (using DiffBind in R-studio)
peakoverlap mergingpeaks ChIPseq DiffBind
8 months ago atlanta • 0
1
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1
reply
1.3k
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Differential expression analysis using two TCGA datasets
DifferentialExpression TCGAbiolinks RNASeq
updated 8 months ago by ★ 5.0k • written 8 months ago by • 0
1
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0
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Modelling gene program dynamics across time with {lemur}
lemur
8 months ago BiotechPedro ▴ 10
0
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1
reply
588
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Intepretation of results
AUCell
written 8 months ago by • 0
0
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4
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2.4k
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DiffBind can't find a DAR
dar ATACSeq DiffBind
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1
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3
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Error in H5Dclose(h5dataset) when trying to read in kallisto h5 files
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8 months ago Sofia • 0
1
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1
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ComBat with repeated measures
ComBat sva
updated 8 months ago by ★ 5.0k • written 8 months ago by • 0
0
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0
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Correlation threshold
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8 months ago user_bioinfo • 0
0
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5
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914
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Bioconductor unable to update 'curl'
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9 months ago kagodwi2 • 0
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4
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Ensembl site unresponsive via biomaRt
biomaRt
updated 8 months ago by • 0 • written 9 months ago by • 0
1,000 results • Page 1 of 20
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Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
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Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
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Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k
I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…
Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0
Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…
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Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
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