0
votes
0
replies
114
views
Can i retrieve domain information from PANTHER ID's using PANTHER.db ?
PANTHER.db
5 weeks ago nromerov • 0
1
vote
3
replies
259
views
cBioPortalData loads empty z-score expression table
cBioPortalData
updated 5 weeks ago by 690 • written 6 weeks ago by • 0
0
votes
0
replies
129
views
crlmm: CDF for Infinium Global Diversity Array By Illumina
globaldiversityarray cdf crlmm
6 weeks ago mayra.haedo • 0
0
votes
0
replies
112
views
Macsquant FCS in read.FCS & opencyto
FlowCytometry flowWorkspace flowCore
6 weeks ago taylor.witte • 0
0
votes
0
replies
138
views
Multifactor analysis in DiffBind
DiffBind multifactoranalysis
6 weeks ago erbrocato • 0
1
vote
4
replies
286
views
EDAseq to normalise for both gene-length and GC-content
norma EDASeq EDA Normalization
6 weeks ago samuel.channon • 0
0
votes
2
replies
199
views
Visium RNA
metaMSdata
updated 6 weeks ago by • 0 • written 6 weeks ago by • 0
1
vote
2
replies
283
views
Extracting genomic sequences using agat and bedtools yields different results
MAST
updated 6 weeks ago by ★ 4.1k • written 6 weeks ago by • 0
0
votes
0
replies
115
views
DNAcopy segment function not reproducible even when setting seed
DNAcopy
6 weeks ago BID • 0
1
vote
3
replies
270
views
miRTarRnaseq library
miRNATarget mirTarRnaSeq
updated 5 weeks ago by ▴ 10 • written 6 weeks ago by • 0
0
votes
2
replies
245
views
Error in msaFun Cannot open input file. No alignment!
msa
written 6 weeks ago by ▴ 30
0
votes
1
reply
195
views
Help with identifying genes mapped to KEGG pathway using pathview
pathview
updated 5 weeks ago by ★ 3.9k • written 6 weeks ago by • 0
0
votes
1
reply
179
views
Rsubread: buildindex() should support multiple reference files
Rsubread
updated 6 weeks ago by 50k • written 6 weeks ago by ▴ 180
0
votes
2
replies
242
views
Scores used for DiffBind's dba.plotHeatmap
DiffBind
7 weeks ago Sam ▴ 10
0
votes
1
reply
226
views
TCGA clinical data: Multiple measure of response columns in merged clinical xml file.
TCGAbiolinks TCGA clinical TCGA-BRCA
written 7 weeks ago by • 0
0
votes
1
reply
194
views
Exact same results in Diffbind with different normalization methods
DiffBind
7 weeks ago • updated 6 weeks ago red_bricks ▴ 50
0
votes
0
replies
132
views
FELLA plotGraph function won't change the legend
FELLA
7 weeks ago yuhang • 0
0
votes
0
replies
145
views
medips-output
ngsReports MEDIPS
7 weeks ago subhiksha • 0
0
votes
0
replies
138
views
Join BOC Sciences at Drug Discovery Chemistry
alabaster.schemas db0
7 weeks ago bocsci11 • 0
0
votes
0
replies
111
views
The graphical interface of FELLA doesn't work
FELLA
7 weeks ago yuhang • 0
0
votes
0
replies
132
views
DEXSeq plot error
DEXSeq DEXSeqNAvalues DEXseq
7 weeks ago jean-christophe.helbling • 0
0
votes
0
replies
152
views
To analyze StringTie data using the isoformSwitchAnalyzeR package
IsoformSwitchAnalyzeR
7 weeks ago Henry • 0
0
votes
1
reply
215
views
Rcpp compilation error
Release Rcpp
updated 7 weeks ago by ★ 4.1k • written 7 weeks ago by ▴ 40
0
votes
0
replies
173
views
Rain error: invalid annotation of time points
rain
7 weeks ago mpuli011 • 0
0
votes
0
replies
185
views
Can MethylationEPIC v1 and v2 data be used together for analysis with minfi?
minfi minfiDataEPIC
8 weeks ago Felix • 0
0
votes
0
replies
147
views
TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
8 weeks ago • updated 6 weeks ago Giovanni Calice ▴ 160
0
votes
0
replies
201
views
Error: grouping factors must have > 1 sampled level
Mast mastR MAST
updated 8 weeks ago by 65k • written 8 weeks ago by • 0
0
votes
0
replies
142
views
Feature Counts -R XS Read Assignment Tag
FeatureCounts Rsubread
8 weeks ago chris2.a.white • 0
0
votes
0
replies
159
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag SplicedAlignment SGSeq minimap2
8 weeks ago jk • 0
0
votes
0
replies
148
views
Can I combine collinear variables into a single value
BatchEffect limma
8 weeks ago Harrsha • 0
0
votes
0
replies
229
views
Error in set(x, j = name, value = value) : Supplied 52 items to be assigned to 55 items of column 'locus'. If you wish to 'recycle' the RHS please…
ASpli
8 weeks ago vipul14 • 0
0
votes
0
replies
115
views
Issue with shiftGAlignmentsList() in ATACseqQC after updating
R ATACseqQC
8 weeks ago danalvoronov ▴ 10
0
votes
0
replies
139
views
lfcSE
RGSEA
9 weeks ago Gordon • 0
0
votes
4
replies
294
views
Interactions in batches of varying size with different number of replicates using limma
limma RNASeq DifferentialExpression
9 weeks ago mperalc • 0
1
vote
0
replies
170
views
Rnaseq sample barcode does not match barcode from TCGA Methylation data
TCGAMethylation450k MethylationArray TCGAbiolinks Tcga TCGAbiolinksGUI.data
9 weeks ago BioinfoMug • 0
0
votes
0
replies
158
views
Unclear exon-exon connection after RSubjunc() usage
IGV Rsubjunc Rsubread
9 weeks ago thomas.heigl.ibk • 0
0
votes
1
reply
246
views
How to select cells that represents more accurately a cluster in a scRNA-seq dataset?
scRNAseq
updated 9 weeks ago by ★ 4.1k • written 9 weeks ago by • 0
0
votes
6
replies
701
views
StringDB: Cannot finish their tutorial because of an error
STRINGdb
updated 7 weeks ago by • 0 • written 9 weeks ago by • 0
0
votes
2
replies
314
views
problem in installing the new version of bioconductor
ANCOMBC
updated 9 weeks ago by 3.9k • written 9 weeks ago by • 0
0
votes
0
replies
168
views
Comparing the effects of a condition over time in two seperate tissues
MAST
10 weeks ago Dillon • 0
0
votes
4
replies
341
views
Installation problem of rtracklayer on Bioconductor version 3.19
newpackage rtracklayer
updated 10 weeks ago by 3.9k • written 10 weeks ago by • 0
0
votes
3
replies
244
views
problems updating package
TrajectoryGeometry
10 weeks ago michael.shapiro • 0
0
votes
0
replies
208
views
how to solve this error?
ChAMPdata ChAMP
10 weeks ago Meghana • 0
1
vote
1
reply
257
views
FCS3.2 reading
flowWorkspace flowCore CytoML
updated 5 weeks ago by ▴ 350 • written 10 weeks ago by ▴ 30
0
votes
0
replies
164
views
flowAI: flow rare check in R vs FlowJo
flowAI
10 weeks ago Olena • 0
0
votes
0
replies
198
views
ISO statistical test for obs-exp A,T,C,G counts by genomic range/position
GenomicRanges
10 weeks ago mat149 ▴ 70
0
votes
0
replies
165
views
GDC slides download
TCGAbiolinks
10 weeks ago jain72744 • 0
0
votes
0
replies
218
views
Differential expression analysis between different species
DEG RNASeqData DifferentialExpression SCBN RNASeq
11 weeks ago Abril • 0
0
votes
4
replies
292
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks Survival
updated 11 weeks ago by ▴ 730 • written 11 weeks ago by • 0
0
votes
1
reply
218
views
"Counts" in enrichGO
GSEABase
updated 11 weeks ago by ▴ 10 • written 11 weeks ago by • 0
1,000 results • Page 2 of 20
Recent ...
Replies
Answer: DESeq2 v1.35.0 by Michael Love 41k
That is not a release (odd 'y' digit). See Bioconductor help pages: https://contributions.bioconductor.org/description.html#description-ver…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by James W. MacDonald 65k
Please don't piggyback on posts from 2.3 years ago. If you have a question, post as a new question.
Answer: DESeq2 v1.35.0 by James W. MacDonald 65k
Odd release versions indicate a devel version, which upon release is incremented to the next even version, so you won't be able to find tha…
Comment: Although I successfully installed the package "simpleaffy'' , I cannot library i by fatinataly • 0
I tried also with oligo does not work, any other suggestion?
Comment: More regions in union when increasing DBA$config$mergeOverlap by Ian D. ▴ 70
Hello. Thanks for the reply. Sorry about this. My testing is telling me that 1 is the default (a gap), not -1 (1bp overlap). Negative …
Votes
Bioconductor 3.19 is Released!
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
Awards • All
Popular Question to rohitsatyam102 ▴ 20
Popular Question to shepherl 3.9k
Popular Question to siajunren • 0
Scholar to Rory Stark ★ 5.2k
Popular Question to tangming2005 ▴ 190
Locations • All
EMBL Heidelberg, just now
United States, 1 minute ago
United States, 12 minutes ago
United States, 14 minutes ago
France, 15 minutes ago
Traffic: 695 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6