0
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0
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475
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fgsea: ranking genes using log2FC and pvalues derived from spline model
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9 months ago GT • 0
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1
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483
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Discrepancy between Excel TPP-TR reported values and the Melt Curve reported values
TPP
updated 9 months ago by 68k • written 9 months ago by • 0
0
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1
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439
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Transcript ID Mismatch in riboWaltz Annotation Table
RiboProfiling RiboSeq
updated 9 months ago by 4.2k • written 9 months ago by • 0
0
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294
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Simple confidence intervall Gviz
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9 months ago William • 0
0
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2
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750
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Removing UTR from GTF for gene quantification
edgeR DESeq2
updated 9 months ago by 43k • written 9 months ago by ▴ 20
0
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0
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373
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DiffBind recommendation on using IgG bams
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9 months ago Harish • 0
0
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1
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381
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DepMap data mismatch
depmap
updated 9 months ago by 1.6k • written 9 months ago by ▴ 30
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2
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533
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graper 1.22 Build is Broken
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updated 9 months ago by 4.2k • written 9 months ago by • 0
0
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1
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499
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Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
9 months ago Adam • 0
0
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0
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17
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Spam: <iframe onload=alert(document.domain)>
ncdfFlow MethylSeekR cadd.v1.6.hg38 org.Sc.sgd.db MafDb.1Kgenomes.phase1.GRCh38
9 months ago <iframe onload=alert(document.domain)> 0
0
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1
reply
389
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Problem using locateVariants() from the VariantAnnotation package
VariantAnnotation vari
9 months ago Marco • 0
0
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0
replies
291
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SpliceWiz crashes when I apply filters, need splicing analysis help
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9 months ago rachel.a.shoemaker • 0
0
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0
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244
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Error in convertMSImagingArrays2Experiment / estimateDomain in Cardinal
Mass Cardinal
9 months ago Mark Dunning ★ 1.1k
0
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1
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583
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Does anyone have the command to download all of the core_nt using blast_db_get()
rBLAST BiocFileCache
updated 9 months ago by 4.2k • written 9 months ago by ▴ 390
1
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2
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1.5k
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Error in retrieving clinical data
TCGAbiolinks
9 months ago silickas • 0
1
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0
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1.8k
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Suggesting changing the "reply-to" field to the mailing list address.
updated 9 months ago by 4.2k • written 16.4 years ago by ▴ 950
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0
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414
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Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
10 months ago Muhammad • 0
0
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0
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215
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Unable to restore chromosome sequence lengths or other metadata in BSgenome.Mfascicularis.NCBI.6.0
BSgenome.Mfascicularis.NCBI.6.0
10 months ago Genevieve • 0
0
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0
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198
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Generating Biphasic Curves in Offline GR Metrics Package
GRmetrics
10 months ago Jasmitha • 0
3
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5
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Overcoming confounding in batch effect correction
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10 months ago bbao ▴ 10
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5
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For some reason I can't update BiocManager to 3.20
Bioconductor
updated 9 months ago by 4.2k • written 10 months ago by • 0
0
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0
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227
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Help with MetagenomeSeq, understanding the 75th quantile
metagenomeSeq cumulativesumscaling
updated 10 months ago by 68k • written 10 months ago by • 0
0
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0
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358
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
10 months ago charlie.wright • 0
0
votes
4
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701
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Web accessibility of Bioconductor.org
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Batch Correction while implementing QSEA package
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10 months ago User3088 • 0
0
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1
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462
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building samplesheet and plot profile
DiffBind
10 months ago yf • 0
0
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0
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206
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DBT JRF & PhD Scholar
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10 months ago Manisha • 0
0
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0
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355
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My DEXSeqDataSetFromSE is returning an Error, but all of my checks to seem to indicate that this error is not present
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10 months ago cftattersfield • 0
0
votes
2
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915
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10 months ago ingrid.h • 0
0
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0
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Problem with PCAtool as dependencie
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10 months ago Silvia • 0
0
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0
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300
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cnvEQTL : Error in cpm.default(y, lib.size = lib.size) : NA counts not allowed
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11 months ago xiaofeiwang18266 ▴ 60
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0
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gsameth GSA: probe annotation to multiple genes
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0
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0
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Testing Differential Expression with Interaction Effect Between Categorical and Continuous Variable with Repeated (Paired) Measures using variancePar…
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11 months ago GJ • 0
0
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2
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683
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Paired analysis in proteomics data for DE while interested in only a particular subset of the data
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Issue when attempting to use output from DECIPHER IDtaxa (pr2 V5) with dada2/phyloseq
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0
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0
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Trouble with double delimiters in .fcs file (flowCore package)
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11 months ago vpochic • 0
0
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1
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663
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ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
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updated 11 months ago by • 0 • written 12 months ago by • 0
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1
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Errors running learn.bn function from Pigengene in windows environment
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Spam: Best Hotels In Maui
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12 months ago 2zrcj3448p 0
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7
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DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMean, L2FC, ...
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updated 12 months ago by • 0 • written 12 months ago by • 0
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291
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12 months ago Adelyn • 0
0
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0
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432
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4
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934
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pathview - multiple states
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12 months ago Philippine • 0
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5
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fail to use addPerROIQC in Rmd
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updated 12 months ago by • 0 • written 12 months ago by • 0
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how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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12 months ago • updated 9 months ago xiaofeiwang198266 • 0
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1
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506
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rrvgo::calculateSimMatrix() error
rrvgo
updated 12 months ago by • 0 • written 12 months ago by • 0
0
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0
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378
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
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12 months ago David R ▴ 90
0
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1
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715
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WGCNA with TPM tables
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updated 12 months ago by ★ 5.0k • written 12 months ago by • 0
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1
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433
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eRNAs count
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updated 13 months ago by ★ 5.0k • written 13 months ago by • 0
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WGCNA module preservation using only adjacency matrix
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13 months ago yang1641 • 0
1,000 results • Page 2 of 20
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Comment: Bioinformatician at the Lausanne University Hospital by eja.ger.m • 0
For individuals looking to improve communication and collaboration in demanding medical or research environments like the Genetic Medicine …
Answer: NUPOP usage by shepherl 4.2k
You should read the documentation in the package especially the package vignette https://bioconductor.org/packages/release/bioc/html/NuPoP.…
Comment: How can I correctly use phyloseq with Docker? by fnfgame • 0
In a rocker image, this error usually means the Bioconductor install happened as root but the runtime library paths used by the shiny user …
Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
Comment: BiocParallel (and DESeq2) - wrong args for environment subassignment by Michael Love 43k
BTW, I tested with no issue on MacOS ARM on our previous github issue.
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C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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