2
votes
2
replies
4.1k
views
Biostatistician Position: UMass Medical School
Microarray Microarray
written 18.4 years ago by ▴ 190
0
votes
3
replies
3.9k
views
Not able to install clusterProfiler
clusterProfiler
updated 22 months ago by • 0 • written 2.4 years ago by • 0
0
votes
0
replies
1.2k
views
using fgsea to compare two datasets
GSEA fgsea
2.4 years ago Cen • 0
0
votes
0
replies
738
views
[Rsamtools] pileup option max_depth behaviour
Rsamtools pileup
2.4 years ago romain.lannes • 0
0
votes
0
replies
850
views
BubbleGUM for multi group comparison of gene set enrichment
RNASeqData GeneSetEnrichment multiGSEA
2.4 years ago sonal • 0
0
votes
1
reply
1.4k
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 2.4 years ago by ★ 6.6k • written 2.4 years ago by • 0
0
votes
0
replies
1.3k
views
SSL connect error in e.g. pathview from R version 4 in Windows 10
pathview SSL curl
2.4 years ago Matthias • 0
0
votes
0
replies
836
views
Downstream analysis of DEG for non-model organisms.
axolotl KEGG GOstats clusterProfiler
2.4 years ago georgii.vdovin • 0
3
votes
5
replies
2.5k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 2.4 years ago by 6.7k • written 2.4 years ago by ▴ 20
0
votes
0
replies
844
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore cytoMEM
2.4 years ago aguirre ▴ 20
0
votes
0
replies
820
views
adding noise to scRNA Seq counts
scRNAseq
2.4 years ago Jiyuan • 0
0
votes
1
reply
877
views
GOSemSim - mgeneSim weird output
GOSemSim similarity
updated 2.4 years ago by ▴ 760 • written 2.4 years ago by • 0
0
votes
0
replies
670
views
msa package Error in .local(x, ...) : consensus matrix 'x' is not in proper format
msa
2.5 years ago Yang • 0
0
votes
0
replies
662
views
Where/how are TCGAbiolinks colData column names sourced from?
clinical TCGAbiolinks
2.5 years ago BioInfoBeginnerrr • 0
0
votes
4
replies
1.0k
views
Pairwise comparison for DEG analysis
limma
updated 2.4 years ago by ★ 5.0k • written 2.5 years ago by • 0
1
vote
0
replies
918
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet subsetByOverlaps GenomicInteractions
2.5 years ago Laureano Tomás-Daza ▴ 10
0
votes
0
replies
462
views
BIOMedical datasets
DATASETSINBIOMEDICINERECURRENTDATA MMAPPR2
2.5 years ago amchakaipa • 0
0
votes
0
replies
13
views
Spam: 7z password remover tool
mgu74bv2cdf NewWave hgu133a2.db
2.5 years ago roma 0
0
votes
0
replies
14
views
Spam: ost to pst migration software
mgu74bv2cdf NewWave hgu133a2.db
2.5 years ago roma 0
0
votes
0
replies
11
views
Spam: win rar password recovery software
ExonArray splots hgu133a2.db
2.5 years ago roma 0
0
votes
5
replies
1.8k
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 2.4 years ago by 4.2k • written 2.5 years ago by • 0
1
vote
3
replies
1.7k
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 2.5 years ago by ▴ 10
0
votes
3
replies
1.3k
views
Clustering coefficient of synteny network
Network syntenet Clustering coefficient
2.5 years ago Alexandros • 0
0
votes
0
replies
1.1k
views
Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2 modelmatrix covariates
2.5 years ago amir • 0
1
vote
5
replies
1.6k
views
DEXSeq output included non-exist exons
DEXSeq exon_definition exon
updated 2.5 years ago by ★ 1.9k • written 2.5 years ago by • 0
0
votes
3
replies
1.5k
views
DECIPHER IdTaxa: Speed up training?
DECIPHER idtaxa
updated 2.5 years ago by ▴ 150 • written 2.5 years ago by ▴ 30
0
votes
0
replies
888
views
How to go for Batch correction in RNA-seq expeiment conducted based on imbalanced Experimental design ?
RNASeqData BatchEffect sva
2.5 years ago amnahsiddiqa ▴ 10
0
votes
1
reply
991
views
GenomicDataCommons: Retrieve patient data for RPPA samples
TCGA GenomicDataCommons GDC
written 2.5 years ago by ▴ 510
0
votes
0
replies
725
views
Csaw - WindowCount : Paired reads unexpectedly filtered out
windowCount csaw paired
2.5 years ago julie.chevalier • 0
0
votes
6
replies
1.5k
views
fastMNN reproducibility across machines when using Docker
batchelor
2.5 years ago nils.eling ▴ 10
0
votes
1
reply
1.2k
views
affy package and SNP arrays
crlmm hapmapsnp6 genomewidesnp6Crlmm affy
updated 2.5 years ago by ★ 4.0k • written 2.5 years ago by 6.7k
1
vote
2
replies
1.3k
views
Error running run_app('LFQ')
LFQ DEPpackage run_app('LFQ') ShinyApps DEP
updated 2.4 years ago by ▴ 220 • written 2.5 years ago by ▴ 10
0
votes
0
replies
536
views
Gene names not included on KEGGgraph plots
KEGGgraph
2.5 years ago hilarius_bookbinder • 0
1
vote
4
replies
2.2k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview KEGG Oryza_sativa
2.5 years ago Jiyoung Lee • 0
0
votes
1
reply
1.1k
views
Gene enrichment analysis
analysis R GOfuncR
updated 2.5 years ago by ▴ 760 • written 2.5 years ago by • 0
0
votes
0
replies
464
views
Can I plot values from LINCS level 4?
cmapR
2.5 years ago Alexandre • 0
1
vote
0
replies
686
views
Help with error running DiffBind
DiffBind
2.5 years ago Chris ▴ 20
0
votes
0
replies
1.3k
views
Issues setting background in STRINGdb
STRINGdb MSstats
2.5 years ago samsiljee • 0
0
votes
1
reply
905
views
customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
2.5 years ago Esraa • 0
0
votes
2
replies
1.1k
views
Error with IsoformSwitchAnalyzer: analyzePFAM
IsoformSwitchAnalyzeR
updated 14 months ago by • 0 • written 2.5 years ago by • 0
0
votes
0
replies
1.1k
views
what should be the input for SingleR() automatic cell type annotation?
SingleR
2.5 years ago Yijing • 0
0
votes
0
replies
837
views
Recommendation sought for differential exon usage of a single gene
isofor DEXSeq DifferentialSplicing
2.5 years ago nick_brittain55 • 0
0
votes
0
replies
1.1k
views
MAGECK MLE design matrix
mageck MAGeCKFlute
2.5 years ago Monika • 0
0
votes
0
replies
967
views
mzTab-M in XCMS
xcms mzTab-M iterativehierarchicalprocessing FBMN
2.5 years ago Abrianna • 0
0
votes
0
replies
842
views
plotGOTermGraph connects all subtrees to the root node
GO.db GOstats
2.6 years ago RuBBiT0 ▴ 10
0
votes
0
replies
1.0k
views
Positive beta-scores of essential genes in drug-treated cells
mageck MAGeCKFlute CrisprScreen
2.6 years ago Monika • 0
0
votes
0
replies
553
views
alpha1 in SAFFRON method in onlineFDR package
onlineFDR
2.6 years ago lgomeso • 0
0
votes
0
replies
664
views
Title in dba.plotProfile
DiffBind
2.6 years ago agata17 • 0
2
votes
4
replies
1.2k
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
2.6 years ago Michael Steinbaugh ▴ 90
0
votes
6
replies
1.5k
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
2.6 years ago • updated 2.5 years ago simone.tiberi • 0
1,000 results • Page 11 of 20
Recent ...
Replies
Comment: EuroBioC2026 abstract submission is open! by TikTsokaasocissalpc • 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data by TikTsokaasocissalpc • 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules by gexose2839 • 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to Vincent J. Carey, Jr. 6.7k
Popular Question to Istvan Albert ▴ 50
Popular Question to Dario Strbenac ★ 1.6k
Scholar to Nikos Ignatiadis ▴ 180
Locations • All
USA, 5 minutes ago
United States, 16 minutes ago
Singapore, 21 minutes ago
United States, 24 minutes ago
Barcelona, Spain, 1 hour ago
Traffic: 1162 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6