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4.1k
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Biostatistician Position: UMass Medical School
Microarray
Microarray
written 18.4 years ago by
David Lapointe
▴ 190
0
votes
3
replies
3.9k
views
Not able to install clusterProfiler
clusterProfiler
updated 22 months ago by
Perry
• 0 • written 2.4 years ago by
Snehal
• 0
0
votes
0
replies
1.2k
views
using fgsea to compare two datasets
GSEA
fgsea
2.4 years ago
Cen
• 0
0
votes
0
replies
738
views
[Rsamtools] pileup option max_depth behaviour
Rsamtools
pileup
2.4 years ago
romain.lannes
• 0
0
votes
0
replies
850
views
BubbleGUM for multi group comparison of gene set enrichment
RNASeqData
GeneSetEnrichment
multiGSEA
2.4 years ago
sonal
• 0
0
votes
1
reply
1.4k
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor
Install
updated 2.4 years ago by
Mike Smith
★ 6.6k • written 2.4 years ago by
Catia
• 0
0
votes
0
replies
1.3k
views
SSL connect error in e.g. pathview from R version 4 in Windows 10
pathview
SSL
curl
2.4 years ago
Matthias
• 0
0
votes
0
replies
836
views
Downstream analysis of DEG for non-model organisms.
axolotl
KEGG
GOstats
clusterProfiler
2.4 years ago
georgii.vdovin
• 0
3
votes
5
replies
2.5k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 2.4 years ago by
Vincent J. Carey, Jr.
6.7k • written 2.4 years ago by
Ndimensional
▴ 20
0
votes
0
replies
844
views
Best method to manually add a cluster ID to a fcs or csv file
flowCore
cytoMEM
2.4 years ago
aguirre
▴ 20
0
votes
0
replies
820
views
adding noise to scRNA Seq counts
scRNAseq
2.4 years ago
Jiyuan
• 0
0
votes
1
reply
877
views
GOSemSim - mgeneSim weird output
GOSemSim
similarity
updated 2.4 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.4 years ago by
Giovanni
• 0
0
votes
0
replies
670
views
msa package Error in .local(x, ...) : consensus matrix 'x' is not in proper format
msa
2.5 years ago
Yang
• 0
0
votes
0
replies
662
views
Where/how are TCGAbiolinks colData column names sourced from?
clinical
TCGAbiolinks
2.5 years ago
BioInfoBeginnerrr
• 0
0
votes
4
replies
1.0k
views
Pairwise comparison for DEG analysis
limma
updated 2.4 years ago by
ATpoint
★ 5.0k • written 2.5 years ago by
Melissa
• 0
1
vote
0
replies
918
views
subsetByOverlaps in GenomicInteractions object doesn't work properly?
InteractionSet
subsetByOverlaps
GenomicInteractions
2.5 years ago
Laureano Tomás-Daza
▴ 10
0
votes
0
replies
462
views
BIOMedical datasets
DATASETSINBIOMEDICINERECURRENTDATA
MMAPPR2
2.5 years ago
amchakaipa
• 0
0
votes
0
replies
13
views
Spam:
7z password remover tool
mgu74bv2cdf
NewWave
hgu133a2.db
2.5 years ago
roma
0
0
votes
0
replies
14
views
Spam:
ost to pst migration software
mgu74bv2cdf
NewWave
hgu133a2.db
2.5 years ago
roma
0
0
votes
0
replies
11
views
Spam:
win rar password recovery software
ExonArray
splots
hgu133a2.db
2.5 years ago
roma
0
0
votes
5
replies
1.8k
views
What to whitelist in Firewall to allow downloading packages
Bioconductor
NetworkInference
updated 2.4 years ago by
shepherl
4.2k • written 2.5 years ago by
Albert
• 0
1
vote
3
replies
1.7k
views
gds in GEOmetadb 2023-06-26 version is empty
GEOmetadb
written 2.5 years ago by
malat1_t
▴ 10
0
votes
3
replies
1.3k
views
Clustering coefficient of synteny network
Network
syntenet
Clustering
coefficient
2.5 years ago
Alexandros
• 0
0
votes
0
replies
1.1k
views
Model matrix for a complex study design using aldex.glm module from ALDEx2 R package
ALDEx2
modelmatrix
covariates
2.5 years ago
amir
• 0
1
vote
5
replies
1.6k
views
DEXSeq output included non-exist exons
DEXSeq
exon_definition
exon
updated 2.5 years ago by
Alejandro Reyes
★ 1.9k • written 2.5 years ago by
zhangpeng1202
• 0
0
votes
3
replies
1.5k
views
DECIPHER IdTaxa: Speed up training?
DECIPHER
idtaxa
updated 2.5 years ago by
Erik Wright
▴ 150 • written 2.5 years ago by
Till
▴ 30
0
votes
0
replies
888
views
How to go for Batch correction in RNA-seq expeiment conducted based on imbalanced Experimental design ?
RNASeqData
BatchEffect
sva
2.5 years ago
amnahsiddiqa
▴ 10
0
votes
1
reply
991
views
GenomicDataCommons: Retrieve patient data for RPPA samples
TCGA
GenomicDataCommons
GDC
written 2.5 years ago by
António Miguel de Jesus Domingues
▴ 510
0
votes
0
replies
725
views
Csaw - WindowCount : Paired reads unexpectedly filtered out
windowCount
csaw
paired
2.5 years ago
julie.chevalier
• 0
0
votes
6
replies
1.5k
views
fastMNN reproducibility across machines when using Docker
batchelor
2.5 years ago
nils.eling
▴ 10
0
votes
1
reply
1.2k
views
affy package and SNP arrays
crlmm
hapmapsnp6
genomewidesnp6Crlmm
affy
updated 2.5 years ago by
Kevin Blighe
★ 4.0k • written 2.5 years ago by
Vincent J. Carey, Jr.
6.7k
1
vote
2
replies
1.3k
views
Error running run_app('LFQ')
LFQ
DEPpackage
run_app('LFQ')
ShinyApps
DEP
updated 2.4 years ago by
Ram
▴ 220 • written 2.5 years ago by
d.kozhevnikova
▴ 10
0
votes
0
replies
536
views
Gene names not included on KEGGgraph plots
KEGGgraph
2.5 years ago
hilarius_bookbinder
• 0
1
vote
4
replies
2.2k
views
pathview - a species in KEGG pathway but not in 'korg'
pathview
KEGG
Oryza_sativa
2.5 years ago
Jiyoung Lee
• 0
0
votes
1
reply
1.1k
views
Gene enrichment analysis
analysis
R
GOfuncR
updated 2.5 years ago by
Lluís Revilla Sancho
▴ 760 • written 2.5 years ago by
Eliza
• 0
0
votes
0
replies
464
views
Can I plot values from LINCS level 4?
cmapR
2.5 years ago
Alexandre
• 0
1
vote
0
replies
686
views
Help with error running DiffBind
DiffBind
2.5 years ago
Chris
▴ 20
0
votes
0
replies
1.3k
views
Issues setting background in STRINGdb
STRINGdb
MSstats
2.5 years ago
samsiljee
• 0
0
votes
1
reply
905
views
customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
2.5 years ago
Esraa
• 0
0
votes
2
replies
1.1k
views
Error with IsoformSwitchAnalyzer: analyzePFAM
IsoformSwitchAnalyzeR
updated 14 months ago by
Akanksha
• 0 • written 2.5 years ago by
Callum
• 0
0
votes
0
replies
1.1k
views
what should be the input for SingleR() automatic cell type annotation?
SingleR
2.5 years ago
Yijing
• 0
0
votes
0
replies
837
views
Recommendation sought for differential exon usage of a single gene
isofor
DEXSeq
DifferentialSplicing
2.5 years ago
nick_brittain55
• 0
0
votes
0
replies
1.1k
views
MAGECK MLE design matrix
mageck
MAGeCKFlute
2.5 years ago
Monika
• 0
0
votes
0
replies
967
views
mzTab-M in XCMS
xcms
mzTab-M
iterativehierarchicalprocessing
FBMN
2.5 years ago
Abrianna
• 0
0
votes
0
replies
842
views
plotGOTermGraph connects all subtrees to the root node
GO.db
GOstats
2.6 years ago
RuBBiT0
▴ 10
0
votes
0
replies
1.0k
views
Positive beta-scores of essential genes in drug-treated cells
mageck
MAGeCKFlute
CrisprScreen
2.6 years ago
Monika
• 0
0
votes
0
replies
553
views
alpha1 in SAFFRON method in onlineFDR package
onlineFDR
2.6 years ago
lgomeso
• 0
0
votes
0
replies
664
views
Title in dba.plotProfile
DiffBind
2.6 years ago
agata17
• 0
2
votes
4
replies
1.2k
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
2.6 years ago
Michael Steinbaugh
▴ 90
0
votes
6
replies
1.5k
views
Merge 2 accounts, or delete 1 account.
Bioconductor
ALL
2.6 years ago • updated 2.5 years ago
simone.tiberi
• 0
1,000 results • Page
11 of 20
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Replies
Comment: EuroBioC2026 abstract submission is open!
by
TikTsokaasocissalpc
• 0
Submitting abstracts for EuroBioC2026 can be exciting but organizing ideas is key. A Random Word Generator [visit][1] can help create uniqu…
Comment: DESeq2 on non-RNASeq counts data
by
TikTsokaasocissalpc
• 0
In data analysis, behavior differences based on data type are common. Similarly, Best EDI Software adapts to non-standard transaction volum…
Comment: blockwiseModule crashes in the end and doesn't generate modules
by
gexose2839
• 0
Sounds good. @[time][1] [1]: https://timeduration.github.io
Comment: PFAM formats changed - is it still possible to use this with ISA?
by
TikTsokaasocissalpc
• 0
For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…
Answer: segfault in edgeR glmQLFit
by
Gordon Smyth
53k
Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…
Votes
C: DESeq2 Following RSEM
Upcoming Ensembl API and data access changes - new blog post available
Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?
Answer: Large logFC but somewhat high FDR
Comment: upstream git branches of bioc-release
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