0
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0
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813
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suggest to report differential expression estimate in ROTS
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3.0 years ago Yongqing • 0
0
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0
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Error: package or namespace load failed for 'AnnotationDbi' in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]):
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3.0 years ago hswdl • 0
0
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2
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Memory error when trying to read part of H5 file
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updated 3.0 years ago by ★ 6.6k • written 3.1 years ago by • 0
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5
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How can I limit the number of displayed genes in heatplot
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updated 2.4 years ago by • 0 • written 3.1 years ago by • 0
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0
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860
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Installing edgeR on M1 mac
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3.1 years ago Onur • 0
1
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1
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How to include background "universe" in compareCluster function of clusterprofiler package
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updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
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0
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997
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Problems running WGCNA
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3.1 years ago S • 0
0
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0
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ALDEx2 Error Message: "dim(X) must have a positive length" when using aldex.clr() with denom="iqlr"
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3.1 years ago cwarden45 • 0
0
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0
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753
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Missing region location database for mm10 in the package
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3.1 years ago Isabelle Stévant ▴ 10
0
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0
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690
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benchdamic 1.4.0 fitNM matrix input
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3.1 years ago Robert Dunne ▴ 10
0
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3
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Representation of self-loops and the calculation of degrees
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updated 2.3 years ago by 6.7k • written 3.1 years ago by • 0
0
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1
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1.0k
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[Methylkit]-Error in validObject(.Object) :
methRead methylkit
3.1 years ago liulip • 0
0
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0
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544
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A problem with Experimental Design for Limma
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3.1 years ago ToReality • 0
2
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4
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CoGAPS Installation Problem - clang compiler does not support '-march=native'
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3.1 years ago • updated 2.9 years ago MayerAdam • 0
0
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0
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819
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normFactors or calcNormFactors (computing the normalization or scaling factors)
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3.1 years ago Bogdan ▴ 670
0
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2
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Diffenrent result from EMBOSS needle and Biostrings pairwiseAlignment ?
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updated 15 months ago by ▴ 20 • written 3.1 years ago by • 0
0
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0
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782
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Updating 16S training set with LearnTaxa
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3.1 years ago Connor • 0
0
votes
4
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1.1k
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what could be the source of this erro
DrugVsDiseasedata
written 3.1 years ago by • 0
0
votes
0
replies
905
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I/O Error in install 'EnsDb.Hsapiens.v75' on a CentOS platform
EnsDb.Hsapiens.v75
3.1 years ago hjh811638667 • 0
0
votes
1
reply
1.7k
views
DGE genes are not available in GSEA
dge gsea
updated 3.1 years ago by ★ 4.1k • written 3.1 years ago by • 0
0
votes
2
replies
4.6k
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Error in UseMethod("rescale")
clusterProfiler
updated 3.1 years ago by ★ 4.1k • written 3.1 years ago by • 0
0
votes
1
reply
1.5k
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Error in loadFUN(x, seqname, ranges) : trying to load regions beyond the boundaries of non-circular sequence "chr2"
HiCDCPlus BSgenome.Hsapiens.UCSC.hg38
updated 2.6 years ago by • 0 • written 3.1 years ago by • 0
0
votes
2
replies
1.2k
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could not find function "get_known_signatures"
MutationalPatterns
updated 3.1 years ago by 6.7k • written 3.1 years ago by ▴ 60
0
votes
3
replies
1.8k
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Problem with multiple sequence alignment using AlignSeqs
R dada2 DECIPHER
updated 3.1 years ago by ▴ 150 • written 3.1 years ago by • 0
0
votes
1
reply
4.0k
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FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-processing step?
LowAssignedReads STAR featureCounts
updated 3.1 years ago by ★ 1.4k • written 3.1 years ago by • 0
0
votes
0
replies
845
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RUVg for SNAP-ChIP ?
RUVSeq
3.1 years ago Bogdan ▴ 670
0
votes
0
replies
566
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RNA seq analysis
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3.1 years ago lesseyl • 0
0
votes
1
reply
872
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HiCDCPlus `construct_features` incompatible with BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0 annotation
HiC-DC+ HiCDCPlus
updated 2.6 years ago by • 0 • written 3.1 years ago by • 0
1
vote
1
reply
1.2k
views
Problems installing methylumi package
methylumi
updated 3.1 years ago by ★ 6.6k • written 3.1 years ago by • 0
0
votes
1
reply
1.2k
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TCGA RNAseq Normalization
normalization RNASEQ Normalization TCGAutils TCGA
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
0
votes
2
replies
1.3k
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ape::dnds produces nan value
R ape dnds nan nanotubes
3.1 years ago Working • 0
0
votes
0
replies
819
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coexpression networks
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3.1 years ago María José • 0
0
votes
0
replies
946
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A question about GWENA R/Bioconductor package
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3.1 years ago Abdullah • 0
1
vote
7
replies
2.5k
views
query regarding error in installation of "goseq" R bioconductor package
R Bioconductor Install
updated 3.1 years ago by 4.2k • written 3.1 years ago by • 0
0
votes
3
replies
1.3k
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IHW for multiple regression
IHW
updated 3.0 years ago by ★ 13k • written 3.1 years ago by • 0
0
votes
0
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1.0k
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DESXSEQ warning (Fit for gene/exon ENSG0000002121 threw the next warning(s): the matrix is either rank-deficient or indefinite)?
DEXSeq
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
0
votes
1
reply
910
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Empty ChipQC Report
ChipQCReport
updated 3.0 years ago by • 0 • written 3.1 years ago by • 0
0
votes
3
replies
1.6k
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Difficulty creating summarized experiment
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updated 3.1 years ago by ▴ 20 • written 3.1 years ago by • 0
1
vote
3
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7.6k
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Not able to install packages in Bioconductor version '3.16'
Install BiocManager version3.16
updated 3.0 years ago by 4.2k • written 3.1 years ago by • 0
1
vote
1
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2.7k
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Instaling glmGamPoi
glmGamPoi
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
1
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1
reply
1.1k
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ggcyto::scale_x_logicle() not converging
ggcyto
updated 3.1 years ago by 4.2k • written 3.1 years ago by ▴ 10
2
votes
3
replies
3.1k
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Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
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updated 3.0 years ago by • 0 • written 3.1 years ago by ▴ 10
0
votes
0
replies
1.5k
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WGCNA: minModuleSize is not responding correctly
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3.1 years ago • updated 15 months ago bioinformaticssrm2011 • 0
1
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1
reply
926
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add genome to BSgenome
bsgenome
updated 3.1 years ago by 4.2k • written 3.1 years ago by ▴ 10
0
votes
0
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1.2k
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How we could calculate the sample size for ATAC seq and single cell RNA seq, respectively?
singlecellRNAseq ATACseq sample-size
3.1 years ago gogniu • 0
0
votes
0
replies
1.0k
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Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics SequencingData
3.1 years ago Rom • 0
0
votes
1
reply
1.2k
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plotDEXSeq error?
DEXSeq dex
3.1 years ago barrypraveen • 0
0
votes
0
replies
1.0k
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Option request for featureCounts: Add an order of read manipulation to 'shift > reduction > extension'
SubRead featureCounts
updated 3.1 years ago by ★ 5.0k • written 3.1 years ago by • 0
0
votes
1
reply
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SingleR error with multiple references
SingleR
updated 2.6 years ago by • 0 • written 3.1 years ago by • 0
0
votes
0
replies
752
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is it possible to limit fgsea to particular tissue type?
fgsea
3.1 years ago kavator ▴ 30
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Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
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Thank you @seandavi for your feedback. I followed your recommendations and generated a [pull request][1] including the fix for this issue…
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