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1
vote
1
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935
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add genome to BSgenome
bsgenome
updated 3.2 years ago by
shepherl
4.3k • written 3.2 years ago by
Luigi
▴ 10
0
votes
0
replies
1.2k
views
How we could calculate the sample size for ATAC seq and single cell RNA seq, respectively?
singlecellRNAseq
ATACseq
sample-size
3.2 years ago
gogniu
• 0
0
votes
0
replies
1.0k
views
Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics
SequencingData
3.2 years ago
Rom
• 0
0
votes
1
reply
1.2k
views
plotDEXSeq error?
DEXSeq
dex
3.2 years ago
barrypraveen
• 0
0
votes
0
replies
1.1k
views
Option request for featureCounts: Add an order of read manipulation to 'shift > reduction > extension'
SubRead
featureCounts
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
Leon
• 0
0
votes
1
reply
1.4k
views
SingleR error with multiple references
SingleR
updated 2.7 years ago by
Irish
• 0 • written 3.2 years ago by
carlo
• 0
0
votes
0
replies
772
views
is it possible to limit fgsea to particular tissue type?
fgsea
3.2 years ago
kavator
▴ 30
0
votes
1
reply
1.4k
views
OligoArrayAux fails to compile
DECIPHER
3.2 years ago
fabian.roger08
▴ 10
1
vote
3
replies
2.1k
views
Error using biomaRt
biomaRt
updated 3.2 years ago by
Mike Smith
★ 6.6k • written 3.2 years ago by
arantes_gabriel
▴ 10
0
votes
0
replies
700
views
Conversion of multiple protein fasta sequences into their gene name
GenePrediction
3.2 years ago
AROCKIYA
• 0
0
votes
2
replies
2.0k
views
Usinig BiocParallel package in R with M1 MAC
RStudio
R
M1
BiocParallel
Mac
updated 3.1 years ago by
Christian Mertes
• 0 • written 3.2 years ago by
me.achleitner
• 0
1
vote
1
reply
1.3k
views
SingleR using TPM in a bulk RNA seq dataset
SingleR
updated 3.2 years ago by
ATpoint
★ 5.0k • written 3.2 years ago by
mea2712
• 0
0
votes
0
replies
640
views
GRaNIE visualizeGRN function bug
GRaNIE
3.2 years ago
Лиза
• 0
0
votes
3
replies
2.0k
views
Can't install packages due to '503 Service Unavailable'
glmGamPoi
BiocManager
updated 3.2 years ago by
Vincent J. Carey, Jr.
6.7k • written 3.2 years ago by
i.am.filippov
• 0
0
votes
7
replies
6.0k
views
Mouse GSEA Analysis
clusterProfiler
updated 3.2 years ago by
Michael Love
43k • written 3.2 years ago by
Rob
• 0
0
votes
0
replies
839
views
Trouble installing lpsymphony
lpsymphony
Maaslin2
3.2 years ago
Vic
• 0
0
votes
0
replies
775
views
polyester running question
polyester
3.2 years ago
Seongwoo Han
▴ 10
0
votes
1
reply
1.1k
views
Improving Immgen Annotations
Annotations
3.2 years ago
Adam
• 0
0
votes
1
reply
1.5k
views
Biocparallel Error "Error: BiocParallel errors element index: 1, 2, 3 first error: unable to find an inherited method for function ‘bpbackend’ fo…
R
OUTRIDER
BiocParallel
updated 3.1 years ago by
Christian Mertes
• 0 • written 3.2 years ago by
me.achleitner
• 0
0
votes
0
replies
1.0k
views
How to fix Flow-Data autoplot heat map
FlowCytometry
flowCore
openCyto
ggcyto
3.2 years ago
Dennis.hinkel
• 0
0
votes
0
replies
1.2k
views
how to get protein sequence similarity and gaps % using Biostrings
sequence-similarity
gaps
homology
Biostrings
pairwise-alignment
3.2 years ago
biong
• 0
0
votes
0
replies
1.5k
views
Extracting gene lists per timepoints using DEGPPatterns package and LRT
DEGseq
clusterProfiler
DEGreport
3.2 years ago
Rob
• 0
1
vote
4
replies
2.6k
views
why there are read counts in the gene knock out rat RNA-seq data
ReadCounts
3.2 years ago
Yijing
• 0
0
votes
1
reply
1.1k
views
Error calling GADEM from rGADEM package
rGADEM
updated 2.7 years ago by
mohamedrefaat.1.1992
• 0 • written 3.2 years ago by
Nils.Rother
• 0
0
votes
0
replies
719
views
ConsensusClusterPlus and Scaled Data
ConsensusClusterPlus
3.2 years ago
William
• 0
0
votes
0
replies
1.1k
views
How to perform a cluster analysis in RT-qPCR or HT-qPCR results?
cluster
qpcr
qpcrNorm
clusterProfiler
HTqPCR
3.2 years ago
Javier
• 0
1
vote
0
replies
1.0k
views
Over Representation Analysis using PFAM/InterPro database
PFAM.db
clusterProfiler
3.2 years ago
alexandr.gopanenko
▴ 50
0
votes
0
replies
887
views
TCGAbiolinks GDCprepare produces error in vectbl_as_col_location()
TCGAbiolinks
3.2 years ago
lescano
▴ 10
0
votes
0
replies
958
views
Database for exploring annotations of the coding genome at variants, such as candidate regulatory SNPs at disease-associated loci.
SNP
ExomeSeqData
snapcount
SNAData
SNPRelate
3.2 years ago
m610110001
• 0
1
vote
0
replies
1.1k
views
Shotgun metagenomics data analysis
Metagenomics
abundance
3.2 years ago
YASIR
▴ 10
0
votes
0
replies
653
views
How does distance in bins calculated? Can it be replaced with distance in bp?
metagene
metagene2
3.2 years ago
sfpacman
• 0
1
vote
1
reply
862
views
DESeq2 results not correct
Mus_musculus_Data
updated 3.2 years ago by
James W. MacDonald
68k • written 3.2 years ago by
Ashish
• 0
0
votes
2
replies
983
views
How to get accession by the name of species
genbank
R
accession
3.2 years ago
wertykus1
• 0
0
votes
0
replies
773
views
Problem loading ChemmineOB
ChemmineOB
updated 3.2 years ago by
shepherl
4.3k • written 3.2 years ago by
juliev
• 0
0
votes
4
replies
1.4k
views
Error installing Bioc
clusterProfiler
Bioconductor
BiocManager
updated 3.2 years ago by
Guido Hooiveld
★ 4.1k • written 3.2 years ago by
Javier
• 0
0
votes
0
replies
882
views
gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto
FlowCytometry
3.3 years ago
Noël
• 0
2
votes
4
replies
1.9k
views
Advice on ANCOMBC 'R CMD build' error for BioC 3.16
BuildReport
updated 3.3 years ago by
shepherl
4.3k • written 3.3 years ago by
HULFRED
▴ 10
0
votes
4
replies
3.3k
views
How to sort SAM file
samtool
updated 3.3 years ago by
swbarnes2
★ 1.4k • written 3.3 years ago by
Maryam.sed1400
• 0
0
votes
0
replies
928
views
Mapping transcript to genomic positions via GenomicFeatures is not splice aware
GenomicFeatures
3.3 years ago
nattzy94
▴ 20
0
votes
2
replies
1.2k
views
Shivani
kegg
updated 3.3 years ago by
deeenes
▴ 60 • written 3.3 years ago by
Shivani
• 0
0
votes
2
replies
1.2k
views
Empty matrix
ChIPpeakAnno
Normalization
EnrichedHeatmap
HELP
TxDb.Celegans.UCSC.ce11.refGene
3.3 years ago
michela
▴ 20
0
votes
0
replies
1.0k
views
Correct GFF3 translation for FeatureCounts
RNASeq
FeatureCounts
Rna
3.3 years ago
rridley3
• 0
0
votes
3
replies
1.3k
views
I have a problem when I run DESeq2 with one variable with 8 levels, I can't find the contrast for any comparison with level 8
Contrast
factors
levels
3.3 years ago
Edgar
• 0
0
votes
1
reply
1.3k
views
Error installing package msa on macOS Monterey 12.6 arm64
msa
arm64
3.3 years ago
lisa.a.ouellette
• 0
1
vote
1
reply
3.6k
views
installation of BioC packages on Mac M1 Monterrey OS
limma
Bioconductor
edgeR
3.3 years ago
Bogdan
▴ 670
0
votes
0
replies
1.6k
views
gseDo function issue
Biocpa
BiocParallel
3.3 years ago
meetdpanjwani1990
• 0
0
votes
1
reply
1.4k
views
DiffBind question _ SampleSheet / Venn diagram issue
chipseq
DiffBind
updated 3.3 years ago by
Rory Stark
★ 5.2k • written 3.3 years ago by
Nicole
• 0
0
votes
0
replies
967
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
3.3 years ago
Bastian
• 0
0
votes
1
reply
2.5k
views
How to interpret MAST coefficients
DifferentialExpression
MAST
updated 7 months ago by
Chenghao
▴ 10 • written 3.3 years ago by
Ismail
• 0
1
vote
2
replies
2.1k
views
What number components should I use if I want to show 2D and 3D UMAP
scater
UAMP
scRNAseq
3.3 years ago
Guandong Shang
▴ 40
1,000 results • Page
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