Showing : Annotation • reset
0
votes
6
replies
363
views
unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 5 weeks ago by ▴ 180 • written 6 weeks ago by • 0
2
votes
1
reply
232
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
updated 7 weeks ago by ★ 4.0k • written 8 weeks ago by ▴ 10
0
votes
0
replies
192
views
Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
3 months ago nilanjanamani88 • 0
2
votes
7
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2.0k
views
How to generate custom annotation for rat genome rn6 in ChIPQC
ChIPQC annotation rn6
updated 4 months ago by • 0 • written 3.7 years ago by • 0
0
votes
5
replies
2.0k
views
Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 10.4 years ago by ★ 13k
5
votes
11
replies
4.2k
views
How to annotate gene names for genomic coordinates?
annotation
written 8.9 years ago by • 0
0
votes
1
reply
986
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
1
vote
4
replies
1.6k
views
Problem installing annotation packages AnnotationDbi & BiocFileCache
software error annotation
written 4.2 years ago by • 0
0
votes
1
reply
498
views
Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 7 months ago by ▴ 780 • written 7 months ago by • 0
1
vote
0
replies
441
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
7 months ago kayla.interdonato ▴ 160
0
votes
1
reply
1.5k
views
Doubts regarding Pathview
Annotation pathview Annotation pathview
written 9.8 years ago by ★ 1.6k
0
votes
1
reply
3.7k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 8 months ago by 65k • written 8 months ago by • 0
3
votes
4
replies
696
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 10 months ago by 65k • written 10 months ago by • 0
2
votes
4
replies
974
views
Use with_go along with other filters in getBM function
Annotation biomaRt
11 months ago RuBBiT0 ▴ 10
0
votes
4
replies
1.2k
views
BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
12 months ago Michael Steinbaugh ▴ 90
0
votes
2
replies
734
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 12 months ago by 65k • written 12 months ago by • 0
0
votes
2
replies
9.0k
views
Clusterprofiler error: No gene can be mapped
software error go annotation clusterProfiler
updated 13 months ago by • 0 • written 4.1 years ago by • 0
0
votes
0
replies
540
views
AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
13 months ago ahiser • 0
0
votes
3
replies
740
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
13 months ago christian.dina • 0
0
votes
0
replies
675
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
14 months ago kayla.interdonato ▴ 160
4
votes
8
replies
6.2k
views
gene ID conversion
annotation
updated 15 months ago by ★ 3.9k • written 4.1 years ago by ▴ 20
0
votes
7
replies
1.4k
views
athPkgBuilder data source :missing probesets
Annotation Annotation
written 17.8 years ago by ▴ 870
2
votes
1
reply
542
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 15 months ago by 65k • written 15 months ago by • 0
1
vote
6
replies
2.2k
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 15 months ago by • 0 • written 3.7 years ago by • 0
0
votes
1
reply
838
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 15 months ago by 65k • written 15 months ago by ▴ 50
3
votes
3
replies
1.1k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 15 months ago by ★ 4.0k • written 15 months ago by ▴ 10
0
votes
1
reply
548
views
Bioconductor tool for curating annotations?
Annotation
updated 15 months ago by ▴ 730 • written 15 months ago by ▴ 180
3
votes
2
replies
2.2k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
15 months ago m-bihie ▴ 10
2
votes
3
replies
1.8k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 16 months ago by • 0 • written 18 months ago by ▴ 10
1
vote
9
replies
1.3k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 16 months ago by 65k • written 16 months ago by • 0
0
votes
3
replies
904
views
A look inside annotation packages
Annotation
17 months ago Ed Siefker ▴ 230
1
vote
2
replies
6.3k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 17 months ago by ▴ 20 • written 6.4 years ago by • 0
0
votes
5
replies
2.1k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 19 months ago by ★ 4.0k • written 19 months ago by ▴ 30
0
votes
0
replies
650
views
News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
19 months ago kayla.interdonato ▴ 160
0
votes
1
reply
607
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 20 months ago by 65k • written 20 months ago by • 0
0
votes
2
replies
2.0k
views
getBM error in the biomaRt R package
Annotation
updated 21 months ago by • 0 • written 2.5 years ago by • 0
4
votes
4
replies
2.7k
views
Retrieve canonical transcript for each gene via ensembldb R package
annotation ensembldb
updated 22 months ago by ▴ 40 • written 5.3 years ago by • 0
1
vote
3
replies
1.7k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 23 months ago by 65k • written 23 months ago by ▴ 60
1
vote
3
replies
1.6k
views
ggbio - change transcript label sizes
ggbio annotation
updated 2.1 years ago by ▴ 50 • written 4.7 years ago by ★ 3.9k
0
votes
1
reply
832
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.1 years ago kayla.interdonato ▴ 160
0
votes
1
reply
818
views
peak annotation
ChIPpeakAnno Annotation
updated 2.1 years ago by ▴ 70 • written 2.2 years ago by ▴ 670
0
votes
0
replies
625
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
2.1 years ago Ava • 0
0
votes
10
replies
2.9k
views
gene set enrichment
Annotation Organism Annotation Organism
updated 2.2 years ago by 50k • written 11.5 years ago by ▴ 220
14
votes
19
replies
19k
views
DESeq2: add annotations (from data frame) to DESeqDataSet
deseq2 annotation granges
updated 2.3 years ago by ▴ 60 • written 9.6 years ago by ▴ 120
3
votes
9
replies
5.2k
views
LOC gene IDs for characterised genes in annotation files
Annotation RNAseq
updated 2.3 years ago by • 0 • written 3.0 years ago by • 0
0
votes
0
replies
699
views
using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
2.3 years ago Amandeep • 0
0
votes
1
reply
1.1k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 2.3 years ago by ▴ 870 • written 2.5 years ago by • 0
0
votes
1
reply
1.3k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 2.3 years ago by 3.9k • written 2.3 years ago by ▴ 20
0
votes
0
replies
718
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
2.4 years ago Ahdee ▴ 50
0
votes
8
replies
4.1k
views
failling to install biomaRt
annotation
updated 2.5 years ago by • 0 • written 4.3 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by JKim • 0
The 1st model has an interaction term, but the 2nd model doesn't have the interaction term. That makes the difference.
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by swbarnes2 ★ 1.4k
If you restrict yourself to, say, genes with a baseMean > 50, are the numerical differences between the two designs significant?
Comment: DESeq2- Mysterious interaction suppresses DEGs by shaunpeterson • 0
The images I tried to attach didn't attach. Here is the PCA (MDS) of all the samples, with the Cortex outlier highlighed. ![enter image de…
Comment: STRINGdb : error with string_db$plot_network() by damian.szk ▴ 80
ok. Forcing non-secure protocol should not be needed anymore, due to changes in the underlying library. However, I will look at why "HTTP" …
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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