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BiocLite
•
reset
1
vote
2
replies
1.2k
views
bioclite behaviour with defunct packages
bioclite
9.9 years ago
David.Duffy
▴ 10
0
votes
6
replies
3.1k
views
Problems installing BiocLite on Fedora 23, R 3.2.2
bioclite
gcc
install
fedora
updated 9.9 years ago by
Martin Morgan
25k • written 9.9 years ago by
Knut Hansen
▴ 20
2
votes
10
replies
6.9k
views
Install older specific version from an R package that is on the Bioconductor Repository
Bioconductor
biocLite
R packages
oldversion
9.9 years ago
svlachavas
▴ 840
0
votes
4
replies
3.7k
views
Impossible to use goseq package - problem with geneLenDataBase
goseq
geneLenDataBase
bioclite
rstudio
updated 10.0 years ago by
Martin Morgan
25k • written 10.0 years ago by
amyfm
▴ 10
0
votes
5
replies
2.5k
views
openCyto fails to load
opencyto
bioclite
updated 10.0 years ago by
yang.chen
• 0 • written 10.0 years ago by
pavitrarc
▴ 20
0
votes
4
replies
6.5k
views
Error in biocLite("BiocUpgrade") when trying to update to latest release
biocinstaller
bioclite
updated 10.0 years ago by
Dan Tenenbaum
★ 8.2k • written 10.0 years ago by
Stephanie M. Gogarten
▴ 890
0
votes
1
reply
2.1k
views
Questions regarding removal and following re-installation of a specific R package using a custom library path
package installation
custom library path
biocLite
bioconductor
10.1 years ago
svlachavas
▴ 840
1
vote
2
replies
1.9k
views
how to load edgeR each time I start R?
edger
bioclite
installation
updated 10.3 years ago by
James W. MacDonald
68k • written 10.3 years ago by
lplough
• 0
1
vote
3
replies
1.8k
views
graphite functions missing, installed version is out of date
graphite
bioclite
10.4 years ago
mhlinder
• 0
0
votes
4
replies
2.6k
views
update packages when installing a new package
bioclite
package updates
updated 10.4 years ago by
Dan Tenenbaum
★ 8.2k • written 10.4 years ago by
carol white
▴ 680
0
votes
3
replies
1.9k
views
biocLite on R 3.2.0 stalls then vanishes
software error
bioclite
updated 10.4 years ago by
Dan Tenenbaum
★ 8.2k • written 10.4 years ago by
Will Landau
• 0
0
votes
5
replies
5.0k
views
FactoMineR failed after installing Bioconductor
software error
factomineR
bioclite
updated 10.4 years ago by
Martin Morgan
25k • written 10.4 years ago by
dany_wm44
• 0
4
votes
2
replies
4.3k
views
Cannot load or update GO.db
GO.db
bioclite
10.5 years ago
Steve Pederson
▴ 170
2
votes
2
replies
5.0k
views
Help with installing biocLite.R
biocLite
biocinstaller
10.5 years ago
thomas.mohr
▴ 20
1
vote
2
replies
1.9k
views
error in sourcing biocLite: Error in get(".BioC_version_associated_with_R_version", envir = asNamespace("tools")
bioclite
10.5 years ago
melanie.shook
• 0
2
votes
2
replies
8.5k
views
biocLite() fails to update packages when main library not writable
bioclite
package updates
updated 10.6 years ago by
Dan Tenenbaum
★ 8.2k • written 10.6 years ago by
Jenny Drnevich
★ 2.0k
0
votes
1
reply
2.2k
views
Warning messages with biocLite()
bioclite
10.9 years ago
Robert Baer
▴ 70
6
votes
2
replies
2.2k
views
BiocUpgrade without being promped to confirm
bioclite
biocinstaller
biocupgrade
updated 11.0 years ago by
Dan Tenenbaum
★ 8.2k • written 11.0 years ago by
Simon Coetzee
▴ 50
1
vote
4
replies
1.5k
views
devel version: rtracklayer depends on GenomicRanges 1.19.3 but that's not available
rtracklayer
genomicranges
bioclite
updated 11.0 years ago by
Marc Carlson
★ 7.2k • written 11.0 years ago by
Janet Young
▴ 740
5
votes
4
replies
5.9k
views
Problem using BiocUpgrade
update
bioclite
updated 11.0 years ago by
Dan Tenenbaum
★ 8.2k • written 11.0 years ago by
dianmante
• 0
2
votes
1
reply
1.6k
views
problems in biocLite
biocLite
installation
updated 11.0 years ago by
Martin Morgan
25k • written 11.0 years ago by
sara.m79
• 0
0
votes
1
reply
1.5k
views
Is there a way to revert from usedevel() mode in bioconductor
usedevel
bioclite
updated 11.1 years ago by
Steve Lianoglou
★ 13k • written 11.1 years ago by
skm770
• 0
72 results • Page
2 of 2
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Replies
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
DESeq2 for candidate gene analysis
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
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