Showing : Bioconductor • reset
1
vote
13
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11k
views
unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 9 months ago by • 0 • written 17 months ago by • 0
0
votes
5
replies
9.3k
views
tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 8 weeks ago by • 0 • written 7.6 years ago by • 0
0
votes
8
replies
8.7k
views
Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 700 • written 2.8 years ago by ▴ 10
5
votes
18
replies
7.6k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 5 months ago by • 0 • written 2.3 years ago by • 0
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 3 months ago by 50k • written 4.8 years ago by • 0
0
votes
1
reply
3.7k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 8 months ago by 65k • written 8 months ago by • 0
3
votes
18
replies
3.0k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 4 weeks ago shepherl 3.9k
0
votes
18
replies
2.6k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.2 years ago by • 0
0
votes
2
replies
2.5k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago Avner • 0
0
votes
6
replies
2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 6 months ago by ★ 4.1k • written 17 months ago by • 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.3 years ago by ▴ 10
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive bioconductor
updated 6 months ago by 3.9k • written 20 months ago by ▴ 30
0
votes
3
replies
1.7k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
0
votes
2
replies
1.4k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 15 months ago by • 0
2
votes
5
replies
1.4k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 14 months ago by • 0
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 6 months ago Konstantinos Yeles ▴ 80
0
votes
1
reply
1.2k
views
News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 15 months ago by ▴ 70
3
votes
5
replies
1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 10 months ago by 6.7k • written 10 months ago by ▴ 20
0
votes
2
replies
1.2k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by • 0 • written 8 months ago by • 0
6
votes
11
replies
1.1k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago gernophil • 0
1
vote
1
reply
1.1k
views
News: Nominations for Bioconductor 2022 Awards!
Bioc2022 Awards Bioconductor Recognition
written 2.2 years ago by 3.9k
0
votes
5
replies
1.0k
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 10 months ago by 3.9k • written 10 months ago by • 0
0
votes
2
replies
984
views
MACS2 not installing
Bioconductor
8 months ago alia.sinqua • 0
2
votes
11
replies
976
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
0
votes
2
replies
930
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.3 years ago by • 0
0
votes
2
replies
910
views
News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
13 months ago • updated 11 months ago shepherl 3.9k
2
votes
1
reply
879
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 7 months ago by 50k • written 7 months ago by • 0
0
votes
6
replies
857
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
11 months ago simone.tiberi • 0
0
votes
2
replies
820
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
0
votes
4
replies
813
views
Bioconductor installation
Bioconductor
written 4 months ago by • 0
5
votes
2
replies
799
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
1
vote
4
replies
793
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
9 months ago patrick.turko • 0
0
votes
4
replies
758
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
12 months ago sreeshmaraj72 • 0
1
vote
1
reply
723
views
News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 17 months ago by 3.9k
1
vote
2
replies
690
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 9 months ago by 65k • written 9 months ago by ▴ 10
0
votes
2
replies
685
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
2
votes
4
replies
667
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 6 months ago by 3.9k • written 6 months ago by • 0
0
votes
0
replies
653
views
NAs in tabular output from DNAcopy
Bioconductor DNAcopy
8 months ago NewtoBioconductor • 0
0
votes
1
reply
644
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 10 months ago by ★ 6.5k • written 10 months ago by • 0
1
vote
0
replies
594
views
News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
12 months ago shepherl 3.9k
0
votes
3
replies
584
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
6 months ago blessybo • 0
0
votes
0
replies
561
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
10 months ago info ▴ 10
0
votes
0
replies
559
views
News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
13 months ago • updated 12 months ago shepherl 3.9k
0
votes
0
replies
556
views
News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
12 months ago shepherl 3.9k
1
vote
5
replies
520
views
Can't post a question containing code?
Bioconductor
updated 9 days ago by • 0 • written 3 months ago by ▴ 10
0
votes
0
replies
517
views
News: Nominations for Bioconductor 2023 Awards!
Awards Bioconductor Bioc2023 Recognition
13 months ago • updated 12 months ago shepherl 3.9k
2
votes
0
replies
506
views
News: Bioconductor's Transition Away from Twitter/X
Bioconductor
6 months ago Maria Doyle ▴ 70
0
votes
0
replies
499
views
News: Junior Developer or New Package Developer Award
Bioconductor Recognition Bioc2023 Awards
12 months ago shepherl 3.9k
0
votes
1
reply
496
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
10 months ago Arianna • 0
0
votes
0
replies
486
views
News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
9 months ago Maria Doyle ▴ 70
50 results • Page 1 of 1
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Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by jane • 0
Your material was totally correct, therefore I was able to learn what I needed to know. I'd want to convey my heartfelt gratitude for shari…
Comment: all variables in design formula must be columns in colData (Deseq2) error by Galina • 0
thank you!
Comment: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
coldata_rat <- data.frame(conditions=..., batch=...)
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it by robersy • 0
Thank you all for your comments. I will follow your suggestions.
Comment: Numerical differences in DESeq2 output depending on different design matrix cons by Ken C • 0
Hi Michael, thanks a lot for your prompt reply! Not sure if this is appropriate or if you are the right person to ask -- is there anything…
Votes
biomaRt not working - lazy table error
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
Comment: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it
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