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Bioconductor
•
reset
6
votes
11
replies
1.1k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago
gernophil
• 0
5
votes
18
replies
7.6k
views
Install DESeq2 problem for macbook pro M1 Max
Bioconductor
Install
DESeq2
updated 4 months ago by
picasa1983
• 0 • written 2.3 years ago by
Victor
• 0
5
votes
2
replies
785
views
ComBat_seq function in sva package does not return a matrix
sva
ComBat
ComBat-seq
Bioconductor
ComBat_seq
7 months ago
Federico
▴ 10
5
votes
1
reply
461
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.9k
4
votes
3
replies
352
views
Bioconductor code browser time out
Bioconductor
updated 4 months ago by
Mike Smith
★ 6.5k • written 4 months ago by
Marek Gierlinski
▴ 30
4
votes
10
replies
1.8k
views
Archives prior to 3.15 gone
archive
bioconductor
updated 6 months ago by
shepherl
3.9k • written 20 months ago by
Florian Finkernagel
▴ 30
4
votes
0
replies
130
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
15 days ago
shepherl
3.9k
3
votes
1
reply
335
views
News:
Bioconductor.org has a new look!
Bioconductor
Website
written 4 months ago by
shepherl
3.9k
3
votes
5
replies
1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor
Install
library
biocmanager
updated 10 months ago by
Vincent J. Carey, Jr.
6.7k • written 10 months ago by
Ndimensional
▴ 20
3
votes
18
replies
3.0k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 29 days ago
shepherl
3.9k
2
votes
11
replies
963
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by
Guido Hooiveld
★ 4.0k • written 7 months ago by
cinzia.spagnoli
• 0
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R
Bioconductor
singlecell
bioinformatics
seurat
updated 3 months ago by
Gordon Smyth
50k • written 4.8 years ago by
sambunga094
• 0
2
votes
1
reply
874
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor
biocon
limma
updated 7 months ago by
Gordon Smyth
50k • written 7 months ago by
ningyuan
• 0
2
votes
0
replies
498
views
News:
Bioconductor's Transition Away from Twitter/X
Bioconductor
6 months ago
Maria Doyle
▴ 70
2
votes
0
replies
253
views
News:
Upholding our core values: a reminder of the Bioconductor Code of Conduct
Bioconductor
3 months ago
Maria Doyle
▴ 70
2
votes
3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor
merge data frames
combine
biocgenerics
8.5 years ago • updated 6 months ago
Konstantinos Yeles
▴ 80
2
votes
5
replies
1.4k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR
RNASeq
RNASeqData
Bioconductor
written 14 months ago by
Rebekah
• 0
2
votes
2
replies
329
views
How to contact Bioconductor's test host?
Bioconductor
updated 4 months ago by
Hervé Pagès
16k • written 4 months ago by
Marek Gierlinski
▴ 30
2
votes
1
reply
292
views
News:
"Edit" button not working
Bioconductor
Website
SupportSite
updated 3 months ago by
Lori
• 0 • written 3 months ago by
shepherl
3.9k
2
votes
4
replies
657
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor
PackageType
BiocStyle
updated 6 months ago by
shepherl
3.9k • written 6 months ago by
lavanilla44
• 0
1
vote
0
replies
289
views
News:
Nominations for Bioconductor Awards 2024!
Recognition
Awards
Bioconductor
Bioc2024
12 weeks ago • updated 10 weeks ago
shepherl
3.9k
1
vote
2
replies
683
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor
biocondu
updated 9 months ago by
James W. MacDonald
65k • written 9 months ago by
Ashton
▴ 10
1
vote
4
replies
787
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
9 months ago • updated 8 months ago
patrick.turko
• 0
1
vote
5
replies
2.2k
views
pd.mogene.2.0st Error Installing in R 3.1.2
oligo
microarray
r
bioconductor
written 9.3 years ago by
chandlerjd58
▴ 10
1
vote
13
replies
11k
views
unable to access index for repository
Bioconductor
ConsensusClusterPlus
updated 9 months ago by
Mehdi
• 0 • written 17 months ago by
k.wickstrom
• 0
1
vote
1
reply
1.1k
views
News:
Nominations for Bioconductor 2022 Awards!
Bioc2022
Awards
Bioconductor
Recognition
written 2.2 years ago by
shepherl
3.9k
1
vote
4
replies
151
views
Error while installing BiocManager::install("org.Vdahliae.eg.db")
org.vdahlaie.eg.db
Bioconductor
updated 1 day ago by
Marcel Ramos
690 • written 1 day ago by
Patadù
▴ 10
1
vote
2
replies
275
views
supportedOrganisms() in goseq producing Error in names(trackIds)
goseq
Bioconductor
rtracklayer
10 weeks ago
thomas
• 0
1
vote
0
replies
314
views
News:
Last Call: Nominations for Bioconductor Awards 2024! Deadline May 15
Recognition
Awards
Bioconductor
Bioc204
7 weeks ago • updated 2 days ago
shepherl
3.9k
1
vote
0
replies
401
views
News:
Bioconductor Website Redesign - We Need Your Input!
Bioconductor
Website
11 months ago
shepherl
3.9k
1
vote
5
replies
513
views
Can't post a question containing code?
Bioconductor
updated 6 days ago by
NATASHA
• 0 • written 3 months ago by
DS
▴ 10
1
vote
0
replies
339
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
27 days ago
BioinfGuru
▴ 30
1
vote
0
replies
592
views
News:
Last Week to Nominate for Bioc2023 Awards!
Bioconductor
Bioc2023
Recognition
Awards
11 months ago
shepherl
3.9k
1
vote
1
reply
721
views
News:
Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor
CAB
bioconductoroversight
community
written 17 months ago by
shepherl
3.9k
0
votes
2
replies
2.5k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago
Avner
• 0
0
votes
0
replies
372
views
News:
May 31st is the last day to nominate for Bioc2023 Awards!
Bioconductor
Awards
Bioc2023
Recognition
11 months ago
shepherl
3.9k
0
votes
0
replies
257
views
Normalising processed Proteomics data in R
Bioconductor
Proteomics
5 months ago
Joshua
• 0
0
votes
0
replies
498
views
News:
Junior Developer or New Package Developer Award
Bioconductor
Recognition
Bioc2023
Awards
12 months ago • updated 11 months ago
shepherl
3.9k
0
votes
1
reply
477
views
BiocManager Package installs
Bioconductor
updated 11 months ago by
shepherl
3.9k • written 11 months ago by
joseph.cerra
• 0
0
votes
0
replies
189
views
News:
EuroBioC2024 abstract submission is open!
Conference
Bioconductor
EuroBioC2024
3 months ago
Maria Doyle
▴ 70
0
votes
1
reply
99
views
Recovering my account credentials on Bioconductor
Bioconductor
updated 9 days ago by
shepherl
3.9k • written 9 days ago by
cyril.dalmasso
• 0
0
votes
7
replies
433
views
Internet connection for Bioconductor packages in Rstudio in Iran...
No_internet_connection_Packages
Proxy
Bioconductor
GEOquery
Internet_connection_problem
6 weeks ago
needNGS
• 0
0
votes
0
replies
517
views
News:
Nominations for Bioconductor 2023 Awards!
Awards
Bioconductor
Bioc2023
Recognition
13 months ago • updated 11 months ago
shepherl
3.9k
0
votes
0
replies
96
views
News:
Important Release 3.18 Freeze Announcment
Release
release
Bioconductor
Bioconducto
4 weeks ago
shepherl
3.9k
0
votes
4
replies
756
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor
Transcriptomics
DifferentialExpression
DESeq2
11 months ago
sreeshmaraj72
• 0
0
votes
2
replies
1.1k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by
Manuel
• 0 • written 7 months ago by
xlu.cpu
• 0
0
votes
0
replies
264
views
News:
Note about packages submitted for Bioconductor 3.19
Release
Submission
release
Bioconductor
3 months ago
shepherl
3.9k
0
votes
3
replies
581
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor
BiocPkgTools
6 months ago
blessybo
• 0
0
votes
1
reply
424
views
Package "Netboost" is an Unix-only package, how can I install it in R?
Bioconductor
netboost
updated 8 months ago by
ATpoint
★ 4.1k • written 8 months ago by
laura1_z
• 0
0
votes
0
replies
92
views
News:
BioC2024 deadlines approaching
BioC2024
Bioconductor
Community
16 days ago
Maria Doyle
▴ 70
50 results • Page
1 of 1
Recent ...
Replies
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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