Showing : Bioconductor • reset
1
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13
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unable to access index for repository
Bioconductor ConsensusClusterPlus
updated 9 months ago by • 0 • written 17 months ago by • 0
0
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5
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9.3k
views
tximport all(file.exists(files)) is not TRUE
bioconductor tximport rnaseq R
updated 8 weeks ago by • 0 • written 7.6 years ago by • 0
0
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8
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8.7k
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Bioconductor version cannot be validated
BiocManager Bioconductor
updated 5 months ago by 700 • written 2.8 years ago by ▴ 10
5
votes
18
replies
7.6k
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Install DESeq2 problem for macbook pro M1 Max
Bioconductor Install DESeq2
updated 5 months ago by • 0 • written 2.3 years ago by • 0
2
votes
4
replies
3.8k
views
How to convert large gene counts data into matrix?
R Bioconductor singlecell bioinformatics seurat
updated 3 months ago by 50k • written 4.8 years ago by • 0
0
votes
1
reply
3.7k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 8 months ago by 65k • written 8 months ago by • 0
3
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18
replies
3.0k
views
News: List of Deprecated Packages for Bioc3.18
Deprecation devel Bioconductor Devel
10 months ago • updated 4 weeks ago shepherl 3.9k
0
votes
18
replies
2.6k
views
problem installing ENmix package
ENmix Bioconductor rtracklayer
written 3.2 years ago by • 0
0
votes
2
replies
2.5k
views
vmatchPattern on DNAstring set
Bioconductor
9 months ago Avner • 0
0
votes
6
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2.2k
views
Error when Installing BioConductor Package ('affy')
Bioconductor Install affy
updated 6 months ago by ★ 4.1k • written 17 months ago by • 0
1
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5
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2.2k
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pd.mogene.2.0st Error Installing in R 3.1.2
oligo microarray r bioconductor
written 9.3 years ago by ▴ 10
4
votes
10
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1.8k
views
Archives prior to 3.15 gone
archive bioconductor
updated 6 months ago by 3.9k • written 20 months ago by ▴ 30
0
votes
3
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1.7k
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R oligoClasses Oligoclass Bioconductor Oligo
written 3.2 years ago by • 0
0
votes
2
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1.4k
views
Conducting pair-wise comparison in DESeq2?
DESeq2 deseq2 biocondu Bioconductor RNASeq
written 15 months ago by • 0
2
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5
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1.4k
views
edgeR Help: Getting no DGEs with an FDR < 0.05
edgeR RNASeq RNASeqData Bioconductor
written 14 months ago by • 0
2
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3
replies
1.2k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 6 months ago Konstantinos Yeles ▴ 80
0
votes
1
reply
1.2k
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News: BioC2023 abstract submission is now open!
presentation BioC2023 Conference community Bioconductor
written 15 months ago by ▴ 70
3
votes
5
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1.2k
views
why is downloading the .tar.gz file for a given bioconductor package, then installing with R CMD INSTALL so much more effective than BiocManager::ins…
Bioconductor Install library biocmanager
updated 10 months ago by 6.7k • written 10 months ago by ▴ 20
0
votes
2
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1.2k
views
Bioconductor version cannot be validated
Bioconductor
updated 6 months ago by • 0 • written 8 months ago by • 0
6
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11
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1.1k
views
Packages don't update, but no error or warning is thrown
Bioconductor
3 months ago gernophil • 0
1
vote
1
reply
1.1k
views
News: Nominations for Bioconductor 2022 Awards!
Bioc2022 Awards Bioconductor Recognition
written 2.2 years ago by 3.9k
0
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5
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1.0k
views
What to whitelist in Firewall to allow downloading packages
Bioconductor NetworkInference
updated 10 months ago by 3.9k • written 10 months ago by • 0
0
votes
2
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982
views
MACS2 not installing
Bioconductor
8 months ago alia.sinqua • 0
2
votes
11
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972
views
Error MakeOrgPackagefromNCBI
Bioconductor
updated 3 months ago by ★ 4.0k • written 7 months ago by • 0
0
votes
2
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930
views
Problem for loading Bioconductor package in R
Bioconductor
written 4.3 years ago by • 0
0
votes
2
replies
907
views
News: List of Deprecated Packages for Bioc3.17
Bioconductor Deprecation Devel devel
13 months ago • updated 11 months ago shepherl 3.9k
2
votes
1
reply
879
views
limma::topTable with adjust.method=NULL is not BH corrected (manual is inconsistent with behavior?)
Bioconductor biocon limma
updated 7 months ago by 50k • written 7 months ago by • 0
0
votes
6
replies
856
views
Merge 2 accounts, or delete 1 account.
Bioconductor ALL
11 months ago simone.tiberi • 0
0
votes
2
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819
views
Job: Bioinformatics Laboratory Head in AI or machine learning (WEHI, Australia)
bioconductor artificialintelligence JobPosting machinelearning
written 8 months ago by 50k
0
votes
4
replies
811
views
Bioconductor installation
Bioconductor
written 4 months ago by • 0
5
votes
2
replies
796
views
ComBat_seq function in sva package does not return a matrix
sva ComBat ComBat-seq Bioconductor ComBat_seq
7 months ago Federico ▴ 10
1
vote
4
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793
views
running Bioconductor Docker images only works with versions <= 3.15
Bioconductor
9 months ago patrick.turko • 0
0
votes
4
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758
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
12 months ago sreeshmaraj72 • 0
1
vote
1
reply
722
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News: Join the Community Advisory Board -- upcoming elections -- deadline Today
Bioconductor CAB bioconductoroversight community
written 17 months ago by 3.9k
1
vote
2
replies
689
views
unable to retrieve certain packages from bioconductor 3.15
Bioconductor biocondu
updated 9 months ago by 65k • written 9 months ago by ▴ 10
0
votes
2
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683
views
For R version 4.0.2 and Biconductor version 3.11, clusterProfiler is not working
Bioconductor clusterProfiler
updated 7 months ago by 65k • written 7 months ago by • 0
2
votes
4
replies
667
views
Import a Bioconductor package that is only used in a vignette/.Rmd script
Bioconductor PackageType BiocStyle
updated 6 months ago by 3.9k • written 6 months ago by • 0
0
votes
0
replies
651
views
NAs in tabular output from DNAcopy
Bioconductor DNAcopy
8 months ago NewtoBioconductor • 0
0
votes
1
reply
643
views
bioconductor - rhdf5 is not avbauloable for bioconductor version "3.14"
Bioconductor Install
updated 10 months ago by ★ 6.5k • written 10 months ago by • 0
1
vote
0
replies
594
views
News: Last Week to Nominate for Bioc2023 Awards!
Bioconductor Bioc2023 Recognition Awards
12 months ago shepherl 3.9k
0
votes
3
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582
views
Support for installation and usage of TxDb.Hsapiens.UCSC.hg19.knownGene package in R version 4.2.2
Bioconductor BiocPkgTools
6 months ago blessybo • 0
0
votes
0
replies
561
views
News: Course - Network Analysis in Systems Biology with R/Bioconductor
Bioconductor Network RNASeqData SystemsBiology
10 months ago info ▴ 10
0
votes
0
replies
559
views
News: Bioconductor Community Engagement, Outreach, and Diversity Award
Awards Bioconductor Bioc2023 Recognition
13 months ago • updated 12 months ago shepherl 3.9k
0
votes
0
replies
556
views
News: Bioconductor Long-term Contribution Award
Bioc2023 Bioconductor Awards Recognition
12 months ago shepherl 3.9k
1
vote
5
replies
518
views
Can't post a question containing code?
Bioconductor
updated 8 days ago by • 0 • written 3 months ago by ▴ 10
0
votes
0
replies
517
views
News: Nominations for Bioconductor 2023 Awards!
Awards Bioconductor Bioc2023 Recognition
13 months ago • updated 12 months ago shepherl 3.9k
2
votes
0
replies
502
views
News: Bioconductor's Transition Away from Twitter/X
Bioconductor
6 months ago Maria Doyle ▴ 70
0
votes
0
replies
499
views
News: Junior Developer or New Package Developer Award
Bioconductor Recognition Bioc2023 Awards
12 months ago shepherl 3.9k
0
votes
1
reply
495
views
Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
10 months ago Arianna • 0
0
votes
0
replies
485
views
News: Bioconductor.org website new design - We Need Your Input!
Bioconductor Community Website
9 months ago Maria Doyle ▴ 70
50 results • Page 1 of 1
Recent ...
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Answer: all variables in design formula must be columns in colData (Deseq2) error by ATpoint ★ 4.1k
Your code is poorly readable. Suggest you select and then highlight with markdown using the `10101` button. Generally, colData(dds) must…
Answer: Subsetting RNAseq data | voomaByGroup() by Gordon Smyth 50k
Judging from your MDS plot, cell types 1 and 2 look radically different, so it would make perfect sense to analyse them separately. There's…
Answer: Numerical differences in DESeq2 output depending on different design matrix cons by Michael Love 42k
Yes there can be small numerical differences in the estimated quantities because of how the algorithms decide to stop iterating.
Answer: DESeq2- Mysterious interaction suppresses DEGs by Michael Love 42k
Removing samples from one group nevertheless changes the variance estimation (dispersion) for all comparisons. So you could have pushed one…
Comment: Ensembl plants at annotationHub? by Daniele • 0
Hi, I'm using Ensembl Plants release 59 with the IWGSC RefSeq v1.1 gene annotation. Thanks a lot for replying so quickly!
Votes
Answer: Error while installing BiocManager::install("org.Vdahliae.eg.db")
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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