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Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Adam
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Hi Aaron,
Thanks a lot for your help!
As you mentioned, I checked my data and it is "DelayedMatrix". I don't know the detailed differe…
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You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
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Thank you, Gordon. X is time splines for time point, and yes, it's needed.
However, I was also thinking to incorporate time point with se…
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Yes, the design and contrasts are correct.
Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
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