Showing : ChiPpeakAnno • reset
0
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3
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387
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ChIPpeakAnno can not load data
genomes ChIPpeakAnno
written 9 weeks ago by • 0
0
votes
0
replies
371
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FindOverlaps, makeVennDiagram and "others"
ATACSeq peaks ATAC ChIPpeakAnno
6 months ago Raghad • 0
0
votes
0
replies
463
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Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
9 months ago nilanjanamani88 • 0
1
vote
5
replies
982
views
ChIPpeakAnno annotatePeakInBatch output
ChIPpeakAnno
13 months ago • updated 12 months ago ilaria.maurizio • 0
0
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0
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470
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Why there are two pfms in the result of oligoSummary function of ChIPpeakAnno package?
ChIPpeakAnno ChIPSeq MotifDiscovery
13 months ago franciscrick41 • 0
3
votes
7
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1.3k
views
Genes in open chromatin region
ChIPpeakAnno DiffBind
written 14 months ago by ▴ 20
2
votes
14
replies
1.7k
views
ChIPpeakAnno: S.lycopersicum annotation missing
ChIPpeakAnno ChIPSeq
updated 15 months ago by 67k • written 15 months ago by ▴ 10
0
votes
1
reply
691
views
genomeStyles error in ChIPpeakAnno
Chippeakanno ChIPpeakAnno
updated 16 months ago by 67k • written 16 months ago by • 0
0
votes
2
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868
views
annotate peaks using a custom genome
ChIPSeq annotate ChIPpeakAnno
updated 19 months ago by ▴ 70 • written 19 months ago by ▴ 140
9
votes
16
replies
2.2k
views
How to apply ChIPpeakAnno to your Granger object to annotate the peaks?
ChIPpeakAnno
19 months ago Chris ▴ 20
1
vote
2
replies
839
views
How to map geneIds to ENTREZIDs
Xenopus_laevis ChIPpeakAnno
21 months ago stacy.genovese • 0
1
vote
1
reply
772
views
Interpretation of $vennCounts output "Others"
ChIPpeakAnno
updated 23 months ago by ★ 1.3k • written 23 months ago by ▴ 10
0
votes
2
replies
898
views
Empty matrix
ChIPpeakAnno Normalization EnrichedHeatmap HELP TxDb.Celegans.UCSC.ce11.refGene
2.1 years ago michela ▴ 20
0
votes
1
reply
752
views
Trying to understand the `select` option in `annotatePeakInBatch` function of `ChIPpeakAnno` package.
ChIPpeakAnno
updated 2.2 years ago by 67k • written 2.2 years ago by • 0
1
vote
1
reply
828
views
How can I do pathway analysis by ChipPeakAnno package?
ChIPpeakAnno
2.3 years ago mehdi • 0
0
votes
1
reply
860
views
AssignChromosomeRegion not working in Rstudio 4.2
ChIPpeakAnno ChIPSeq
updated 2.5 years ago by ★ 1.3k • written 2.5 years ago by • 0
0
votes
1
reply
1.1k
views
peak annotation
ChIPpeakAnno Annotation
updated 2.6 years ago by ▴ 70 • written 2.7 years ago by ▴ 670
1
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2
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2.0k
views
another problem when converting bed to granges using togranges
ChIPpeakAnno
2.8 years ago Bakhtiyar • 0
0
votes
2
replies
1.1k
views
ChIP-seq or CUT&RUN enrichment
ChIPQC ChIPpeakAnno
2.8 years ago Bogdan ▴ 670
2
votes
6
replies
2.8k
views
Problem converting a bed file to granges using togranges chippeakanno
ChIPpeakAnno
updated 2.8 years ago by ▴ 70 • written 2.8 years ago by • 0
0
votes
0
replies
939
views
findOverlapsOfPeaks - peaklist of connectedPeaks="min:
findOverlapsOfPeaks ChIPpeakAnno chipseq
3.0 years ago Nadav • 0
1
vote
2
replies
2.9k
views
ChIPpeakAnno findOverlapsOfPeaks error: "Error in FUN(X[[i]], ...) : Inputs contains duplicated ranges. please recheck your inputs."
HELP ChIPpeakAnno
3.0 years ago lexi.kellington • 0
0
votes
4
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2.4k
views
Error in .order_seqlevels(chrom_sizes[, "chrom"])
ChIPpeakAnno
3.0 years ago Tongjun • 0
1
vote
6
replies
1.9k
views
Annotation by CHIPeakAnno tool
ChIPpeakAnno
3.4 years ago Arunima ▴ 10
1
vote
3
replies
1.1k
views
genomicElementDistribution function not found
ChIPpeakAnno
updated 3.4 years ago by ★ 4.3k • written 3.4 years ago by ▴ 10
2
votes
2
replies
1.5k
views
Hello how to use ChIPpeakAnno for latest version of ensemble genome aligned data
ChIPpeakAnno
3.7 years ago Lucky • 0
7
votes
9
replies
2.3k
views
counts of overlapping peaks using findOverlapOfPeaks from ChIPpeakAnno
chippeakanno
updated 4.2 years ago by ★ 4.3k • written 4.2 years ago by ▴ 140
2
votes
2
replies
976
views
how to suppress makeVennDiagram plot
ChIPpeakAnno
4.3 years ago C T ▴ 140
1
vote
2
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1.1k
views
How to get 'shortest' distance with ChIPpeakAnno::binOverFeature
ChIPpeakAnno
5.3 years ago liruiradiant • 0
0
votes
1
reply
1.3k
views
Unable to annotate in ChIPQC using yeast genome
ChIPQC GenomicRanges ChIPpeakAnno
updated 3.5 years ago by • 0 • written 5.5 years ago by • 0
0
votes
4
replies
1.5k
views
chippeakanno file reading error
ChiPpeakAnno
5.7 years ago saddamhusain77 • 0
1
vote
6
replies
1.6k
views
how does "maxgap" in ChIPpeakAnno working?
ChIPpeakAnno
5.8 years ago ngs06 ▴ 20
2
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10
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3.7k
views
ChIPpeakAnno, MACS format annotation
bioconductor ChIPpeakAnno
updated 5.9 years ago by ★ 4.3k • written 7.6 years ago by ▴ 30
0
votes
7
replies
1.8k
views
ChIPpeakAnno overlap peaks with TSS returns more than TSS overlap
chippeakanno chipseq R
updated 6.2 years ago by ★ 1.3k • written 6.2 years ago by • 0
3
votes
6
replies
1.8k
views
ChIP peak annotation: how to get all genes that overlap each peak?
ChIP-seq chippeakanno chipseeker
6.3 years ago 94133 • 0
0
votes
1
reply
1.3k
views
Error creating pool for permutation test (PeakPermTest)
permutation pool chippeakanno
6.3 years ago ge2sasag • 0
1
vote
1
reply
1.1k
views
Row clustering featureAlignedHeatmap function (ChipPeakAnno package)
heatmap chippeakanno
updated 6.6 years ago by ★ 1.3k • written 6.6 years ago by • 0
2
votes
2
replies
1.8k
views
Can't install ChIPpeakanno - "libmysqlclient was not found" - do I need to remove latest version of R?
ChIPpeakAnno
updated 6.8 years ago by ★ 6.6k • written 6.8 years ago by ▴ 70
0
votes
3
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1.6k
views
integer overflow in ChIPpeakAnno assignChromosomeRegion
ChIPpeakAnno assignChromosomeRegion
updated 6.8 years ago by ★ 4.3k • written 6.8 years ago by ▴ 740
1
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1
reply
1.1k
views
Custom regions in assignChromosomeRegion?
chippeakanno
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by • 0
1
vote
2
replies
2.7k
views
Error : object path is not exported by namespace:Rsamtools
packages installation problem rsamtools chippeakanno ensembldb
6.9 years ago inzirio ▴ 10
1
vote
4
replies
1.7k
views
ChIPpeakAnno binOverGene error
chippeakanno binOverGene
updated 7.0 years ago by ★ 1.3k • written 7.0 years ago by • 0
0
votes
1
reply
1.3k
views
ChIPpeakAnno to find peaks nearest to miRNA
ChIPpeakAnno ChIPpeakAnno
updated 7.1 years ago by • 0 • written 12.0 years ago by ▴ 120
2
votes
3
replies
2.9k
views
org.Mm.eg.db mm9 version for ChIPpeakAnno getEnrichedGO function
chippeakanno annotationdbi
updated 7.1 years ago by • 0 • written 9.1 years ago by • 0
0
votes
1
reply
1.5k
views
featureAlignedSignal() error: deparse(sig): object 'sig' not found.
bioconductor chippeakanno featureAlignedDistribution featureAlignedSignal
updated 7.1 years ago by • 0 • written 8.2 years ago by • 0
0
votes
1
reply
1.1k
views
Help for ChIP script !! Error message while installing packages
annotation chippeakanno
updated 7.1 years ago by 25k • written 7.1 years ago by • 0
5
votes
4
replies
5.2k
views
What are out-of-bound ranges? Is it necessary to get rid of them?
r ChIPpeakAnno
7.6 years ago • updated 7.3 years ago salamandra ▴ 20
4
votes
3
replies
1.5k
views
Annotation Database for ChIPpeakAnno
ChIPpeakAnno
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by ▴ 110
1
vote
1
reply
1.3k
views
Regarding ChIPpeakAnno installation error
chippeakanno
updated 7.6 years ago by 25k • written 7.6 years ago by ▴ 10
0
votes
3
replies
2.8k
views
ChIPpeakAnno :findOverlapsOfPeaks: number for overlap peak in venn diagram is different than output of ol1$overlappingPeaks
chippeakanno
updated 7.6 years ago by ★ 1.3k • written 7.6 years ago by • 0
50 results • Page 1 of 1
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Comment: preprocessIllumina error with EPICv2 array by Rakesh • 0
Amazing, thanks for the help!
Answer: Allele frequencies for ALL alleles of one SNP ? by Robert Castelo ★ 3.4k
Hi, the [GenomicScores](https://bioconductor.org/packages/GenomicSCores) package provides supporting infrastructure to create annotation re…
Answer: preprocessIllumina error with EPICv2 array by James W. MacDonald 67k
You shouldn't need to change the annotation, and certainly not like that. You should never need to use the `@` function directly - there ar…
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by Haibo Liu • 0
Thank you for your reminder. I did forget that, but I just bumped the version to 1.1.1.
Comment: CleanUpRNAseq with a GTF that is missing mitochondria annotation data by shepherl 4.1k
@haibol2017-23658 make sure you have the valid version bump in the description on our git repository in order for the new version to propa…
Votes
Answer: preprocessIllumina error with EPICv2 array
Answer: preprocessIllumina error with EPICv2 array
Answer: UniProt.ws query loading indefinitely
Answer: Package needs internet access
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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Scholar to James W. MacDonald 67k
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