Showing : DMRcate • reset
0
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2.4k
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Significant DMRs in genes with no single significant CpG using limma
DMRcate
written 5.6 years ago by • 0
0
votes
1
reply
237
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No preprocessing allowed for EPICv2 with DMRcate
missMethyl DMRcate
updated 10 weeks ago by 68k • written 10 weeks ago by • 0
0
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1
reply
1.4k
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
updated 11 weeks ago by • 0 • written 3.3 years ago by ▴ 50
2
votes
4
replies
578
views
Can we get beta values with DMRcate package
DMRcatedata DMRcate
3 months ago Melisa Tecik • 0
4
votes
8
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1.2k
views
how to apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
DMRcate minfi
3 months ago • updated 4 weeks ago xiaofeiwang198266 • 0
1
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2
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314
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Limma Interaction Effect with Covariates
limma DMRcate
4 months ago kitzhu • 0
0
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0
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280
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DMRcate pcutoff setting
EpicV2 DMRcate
5 months ago kitzhu • 0
3
votes
12
replies
4.5k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 8 months ago by ▴ 230 • written 16 months ago by ▴ 10
3
votes
2
replies
884
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 9 months ago by 52k • written 10 months ago by • 0
1
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2
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1.9k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 11 months ago by ▴ 230 • written 2.1 years ago by ▴ 10
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0
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455
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DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
11 months ago Macsue • 0
1
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2
replies
2.3k
views
EPIC array hg38 annotation?
minfi DMRcate
13 months ago mycetes • 0
0
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0
replies
406
views
What is the significance of DMR in DMRcate
DMRcate
13 months ago chuanjiao6 • 0
3
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2
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562
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Question about DMRcate
DMRcate dmrcate
14 months ago • updated 13 months ago chuanjiao6 • 0
8
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7
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2.0k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 15 months ago by ▴ 30
0
votes
5
replies
1.0k
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 17 months ago by 68k • written 17 months ago by ▴ 10
0
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1
reply
1.1k
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 17 months ago by 4.1k • written 17 months ago by • 0
3
votes
4
replies
1.5k
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
18 months ago Jitendra ▴ 10
0
votes
1
reply
877
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 19 months ago by ▴ 230 • written 19 months ago by • 0
2
votes
6
replies
1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 23 months ago by ▴ 230 • written 23 months ago by • 0
6
votes
12
replies
2.6k
views
Error when loading DMRcate
DMRcate
2.1 years ago Bazingastats • 0
0
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0
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981
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
2.1 years ago gilliangoobie • 0
2
votes
6
replies
2.4k
views
DMRcate
DMRcate R DMRcatedata Markdown
2.1 years ago yr542 • 0
0
votes
1
reply
1.2k
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 3.4 years ago by 68k • written 3.4 years ago by ▴ 30
0
votes
6
replies
1.7k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 3.7 years ago by ▴ 20 • written 4.7 years ago by ▴ 10
1
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2
replies
1.9k
views
DMRcate extractRanges error
DMRcate
4.1 years ago macsue.jacques ▴ 10
0
votes
0
replies
981
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
4.3 years ago Mike ▴ 10
3
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4
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1.5k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 4.5 years ago by ▴ 230 • written 4.5 years ago by ▴ 10
0
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2
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1.0k
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
4.7 years ago zh9118 • 0
4
votes
9
replies
3.7k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 3.4 years ago by ▴ 30 • written 4.8 years ago by ▴ 10
1
vote
8
replies
2.6k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 4.8 years ago by ▴ 230 • written 4.8 years ago by ▴ 40
3
votes
5
replies
1.8k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 5.5 years ago by 68k • written 5.5 years ago by ▴ 10
0
votes
2
replies
1.6k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 5.7 years ago by ▴ 290 • written 5.7 years ago by • 0
1
vote
3
replies
1.6k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 5.8 years ago by 68k • written 5.8 years ago by ▴ 10
2
votes
18
replies
6.0k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 6.7 years ago by • 0 • written 8.8 years ago by ▴ 160
0
votes
3
replies
2.0k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
6.7 years ago 574233829 • 0
2
votes
6
replies
2.4k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 6.9 years ago by ▴ 230 • written 6.9 years ago by • 0
0
votes
3
replies
2.3k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 7.8 years ago by ▴ 90 • written 7.8 years ago by • 0
1
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2
replies
1.9k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 7.8 years ago by ▴ 230 • written 7.8 years ago by • 0
1
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3
replies
1.8k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.9 years ago by 68k • written 7.9 years ago by ▴ 10
0
votes
11
replies
4.8k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 14 months ago by ▴ 230 • written 8.0 years ago by ★ 2.0k
1
vote
10
replies
3.6k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 8.0 years ago by ▴ 230 • written 8.0 years ago by ▴ 10
0
votes
1
reply
1.8k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 8.1 years ago by ▴ 230 • written 8.1 years ago by ▴ 10
0
votes
2
replies
1.7k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 8.2 years ago by ▴ 230 • written 8.2 years ago by • 0
1
vote
2
replies
1.4k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 8.2 years ago by ▴ 230 • written 8.2 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 8.2 years ago by ▴ 230 • written 8.2 years ago by • 0
0
votes
9
replies
21k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 8.2 years ago by ▴ 230 • written 8.4 years ago by • 0
1
vote
15
replies
2.9k
views
DMRcate results meanpvals
dmrcate
updated 8.7 years ago by ▴ 230 • written 8.7 years ago by ▴ 160
0
votes
1
reply
1.2k
views
conflicts in chromosome number
DMRcate
updated 8.7 years ago by ▴ 230 • written 8.7 years ago by • 0
2
votes
2
replies
2.0k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 9.3 years ago by ▴ 230 • written 9.3 years ago by • 0
50 results • Page 1 of 1
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Comment: DiffBind custom normalization factor by Abbie • 0
Hello! Thanks so much for adding dba.normalize and all the documentation in the manual! I'm hoping I can ask a follow-up question here. I…
Answer: CpGs with genomic positions greater than the chromosome size in EPICv2? by James W. MacDonald 68k
All of the annotation packages provided by Bioconductor are simply repackaging of existing data from one or more sources. In this case, the…
Comment: Using TPM from tximport of Salmon output for singscore by Kent • 0
Thank you for the suggestions Michael. Would you say that after filtering out the low count genes, `rlog(counts, blind = T)` is doing the s…
Comment: Using TPM from tximport of Salmon output for singscore by Michael Love 43k
For clustering generally we recommend `vst()` see the workflow for example. For working with individual samples, I can see how a scaling/t…
Comment: DESeq2 model - How to test case/control time course model when taking account wi by Michael Love 43k
I'd recommend working with a local statistician or someone familiar with linear models in R. I have to reserve my time on the support site …
Votes
clusterProfiler-GO enrichment Error
A: Machine learning in R book
Data preparation and Machine learning on time course RNAseq data
Data preparation and Machine learning on time course RNAseq data
Answer: Use of org.Rn.eg.db with GRCr8 reference genome
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