Showing : Docker • reset
3
votes
7
replies
1.8k
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Installing densvis on a Singularity container
densvis docker
updated 11 months ago by ▴ 160 • written 12 months ago by 65k
0
votes
2
replies
543
views
Docker usage with Trio Bioconductor Package
VariantAnnotation docker trio
updated 11 months ago by ★ 4.1k • written 11 months ago by • 0
2
votes
3
replies
1.5k
views
How to use a specific Bioconductor version in custom Dockerfile
singularity ensemblVEP docker
17 months ago • updated 16 months ago jtaylor-predicine • 0
0
votes
5
replies
1.8k
views
How to add a BioConductor package to a Docker image based on rocker/shiny
docker
20 months ago • updated 19 months ago Sam ▴ 10
1
vote
7
replies
4.9k
views
Installing Bioconductor packages in Docker
Bioconductor DOCKER RShiny
updated 20 months ago by ▴ 10 • written 3.3 years ago by • 0
0
votes
2
replies
1.1k
views
does bioconductor/bioconductor_docker:RELEASE_X_Y install CRAN packages from a fixed snapshot?
mran docker cran
updated 2.2 years ago by 65k • written 2.2 years ago by ▴ 20
5
votes
4
replies
2.7k
views
XVector installation fails because zlib.h is not found
XVector docker Install
2.4 years ago RobKo ▴ 10
0
votes
1
reply
1.8k
views
Install using BiocManager::install() doesn't work in docker container
Bioconductor docker Install
updated 3.4 years ago by 25k • written 3.4 years ago by • 0
2
votes
2
replies
1.0k
views
docker image with VariantAnnotation package?
docker
updated 3.9 years ago by 25k • written 3.9 years ago by ▴ 470
0
votes
1
reply
1.1k
views
News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release package submission docker deadline News
4.1 years ago shepherl 3.8k
3
votes
1
reply
1.1k
views
Docker container with bioconductor and devtools
docker
updated 4.5 years ago by 3.8k • written 4.5 years ago by • 0
0
votes
0
replies
859
views
Job: Research Associate in Genomics Pipelines @ UEA, Norwich, UK
pipelines NGS Research associate Docker Job
4.8 years ago Daniel Brewer ▴ 100
6
votes
9
replies
2.3k
views
Install Bioconductor 3.7
docker BiocManager BiocVersion
updated 5.0 years ago by 25k • written 5.0 years ago by ▴ 90
1
vote
1
reply
2.0k
views
Job: junior level position in proteomics/data science
proteomics machine learning git docker Job
updated 6.3 years ago by • 0 • written 6.6 years ago by ▴ 70
0
votes
1
reply
1.3k
views
Error installing flowDensity on latest docker container
R package installation docker
updated 6.5 years ago by 3.8k • written 6.5 years ago by • 0
0
votes
0
replies
1.3k
views
News: Dockers have been updated for Bioc3.6 and Bioc3.7
docker bioconductor release devel News
6.5 years ago shepherl 3.8k
2
votes
0
replies
1.0k
views
News: Bioconductor Dockers Updated
bioconductor docker News
7.0 years ago shepherl 3.8k
3
votes
0
replies
1.3k
views
News: Updates to Bioconductor Dockers
docker bioconductor News
7.2 years ago shepherl 3.8k
0
votes
1
reply
1.5k
views
apt-get problems with latest bioconductor/release_core docker
docker
7.4 years ago • updated 7.3 years ago Karl Forner ▴ 70
0
votes
10
replies
2.0k
views
Ability to use a particular package via Docker
Docker flowcore dockerfile
7.6 years ago jordan.xanthopoulos • 0
0
votes
1
reply
1.4k
views
bioconductor/release_core:20160630 - BiocInstaller version 3.2 is too old for R version 3.3.1
docker bioconductor
7.8 years ago Karl Forner ▴ 70
1
vote
4
replies
2.5k
views
Bioconductor docker images without Rstudio-server?
docker
updated 7.8 years ago by ★ 8.2k • written 8.4 years ago by ▴ 90
0
votes
0
replies
1.1k
views
AnnotationData Packages version and pipeline management
docker annotation pipeline
8.0 years ago Elena Grassi ▴ 10
7
votes
0
replies
3.7k
views
Tutorial: New edX "Data analysis for Life Sciences" module: High performance computing for reproducible genomics
annotation genomicranges visualization docker shiny Tutorial
8.1 years ago Vincent J. Carey, Jr. 6.7k
1
vote
3
replies
1.5k
views
confused about bioconductor/release_microarray:3.2 tag
docker microarray
8.4 years ago Karl Forner ▴ 70
4
votes
2
replies
5.6k
views
how can I install packages in docker/R/bioconductor so that they persist?
docker
8.5 years ago anton.kratz ▴ 60
1
vote
10
replies
2.7k
views
Building mzR package under docker fails
mzR docker debian centos rocker
8.6 years ago mjmg • 0
3
votes
9
replies
2.3k
views
Bioconductor docker tags and release versions
docker release
8.9 years ago • updated 8.6 years ago Karl Forner ▴ 70
2
votes
4
replies
1.8k
views
no date tag included in docker ps output
docker reproducibility
8.6 years ago anton.kratz ▴ 60
3
votes
3
replies
2.9k
views
best way to terminate a Docker-based bioconductor/RStudio session?
docker
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by ▴ 60
5
votes
2
replies
2.4k
views
how can I access my local files (data, R-scripts) from the *docker* R/Bioconductor?
docker ubuntu
updated 8.6 years ago by ★ 8.2k • written 8.6 years ago by ▴ 60
1
vote
4
replies
1.9k
views
how to install Rsamtools in bioconductor/devel_base docker
docker Rsamtools
8.7 years ago Ou, Jianhong ★ 1.3k
3
votes
6
replies
2.1k
views
Bioconductor Docker Development container
docker bioc-devel
updated 8.9 years ago by ★ 8.2k • written 8.9 years ago by ▴ 10
7
votes
0
replies
2.0k
views
News: Announcing Docker containers for Bioconductor
docker News
9.3 years ago Dan Tenenbaum ★ 8.2k
34 results • Page 1 of 1
Recent ...
Replies
Answer: SGSeq: moving toward diffex from SGSeq analysis by Leonard Goldstein ▴ 200
`vid` and `eid` are unique identifiers for splice variants and splicing events respectively. They are analogous to exon bin and gene identi…
Comment: Help with error using camera() in limma by Chris • 0
Thanks James! I fixed the error. I try gene symbol instead of entrez and it worked.
Comment: limma for gene expression analysis with big and unbalanced sample size by XW • 0
Could you explain more about the comment "there are no problems with using limma for unbalanced data sets" ? thanks.
Comment: Limma, eBayes different sample size of groups and adjustment by XW • 0
Could you explain more about how the analysis self-correct the different sample sizes when calling DEGs in limma? Thanks
Answer: How do I select a GC file (gc.wig)? (How to determine the inputdata of HMMcopy) by James W. MacDonald 65k
The section of the vignette that is *directly above the one you quote* says that you can use the HMMcopy utils to do all three things. And …
Votes
C: How to establish a subset from TxDb.Hsapiens.UCSC.hg38.knownGene DB
C: Extremely big genes in annotation TxDb packages
Make custom Txdb class objects from Txdb
Comment: Help with error using camera() in limma
Answer: Help with error using camera() in limma
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