Showing : Ensembldb • reset
1
vote
0
replies
76
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
7 days ago Aleena ▴ 30
2
votes
5
replies
318
views
get BM error
ensembldb
updated 27 days ago by 66k • written 27 days ago by • 0
0
votes
1
reply
194
views
Convert transcriptomic bam to genomic bam?
ensembldb transcriptome genome coordinateconversion
updated 7 weeks ago by 42k • written 7 weeks ago by ▴ 10
0
votes
1
reply
249
views
Canonical transcripts Mus musculus
TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus
updated 3 months ago by 66k • written 3 months ago by ▴ 10
2
votes
3
replies
366
views
seqlevelsStyle() not working
ensembldb genomei GenomeInfoDb
3 months ago Kai Hu ▴ 70
1
vote
1
reply
249
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 3 months ago by • 0 • written 3 months ago by ▴ 10
2
votes
3
replies
525
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
5 months ago R_Page • 0
2
votes
5
replies
864
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
6 months ago j_denton • 0
0
votes
4
replies
593
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO ensembldb
7 months ago Rockbar • 0
0
votes
10
replies
863
views
ensembldb::getGenomeTwoBitFile() not working for many species
AnnotationHubSoftware ensembldb
updated 8 months ago by 66k • written 8 months ago by • 0
3
votes
1
reply
1.5k
views
Mouse to Human Genes using bioconductor
ensembldb
updated 9 months ago by 66k • written 9 months ago by ▴ 10
0
votes
1
reply
507
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread ensembldb
updated 9 months ago by 66k • written 9 months ago by • 0
0
votes
1
reply
1.6k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 10 months ago by 42k • written 10 months ago by ▴ 30
0
votes
2
replies
1.1k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 13 months ago by ★ 2.0k • written 13 months ago by • 0
0
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0
replies
716
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
15 months ago ginie.dub • 0
1
vote
0
replies
681
views
News: Ensembl 109 has been released
ensembldb
15 months ago Aleena ▴ 30
0
votes
3
replies
1.0k
views
Uniprot IDs and NCBI taxonomy IDs to coding sequences
ensembldb biodbUniprot
updated 16 months ago by 66k • written 16 months ago by • 0
2
votes
4
replies
749
views
Successor of genesBy Defunct Function
ensembldb
updated 16 months ago by 16k • written 16 months ago by ★ 1.5k
1
vote
3
replies
862
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
17 months ago mbansal • 0
2
votes
3
replies
1.8k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 16 months ago by • 0 • written 18 months ago by ▴ 10
5
votes
3
replies
1.5k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
19 months ago • updated 16 months ago jamie.gearing ▴ 60
1
vote
2
replies
792
views
News: Ensembl 108 has been released!
biomaRt ensembldb ensembl
written 19 months ago by ▴ 10
0
votes
5
replies
2.1k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 19 months ago by ★ 4.0k • written 19 months ago by ▴ 30
0
votes
4
replies
1.1k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
20 months ago • updated 19 months ago dario.beraldi • 0
2
votes
3
replies
2.3k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 20 months ago by ▴ 120 • written 20 months ago by ▴ 10
0
votes
1
reply
722
views
getBM Error with certain attribute combinations
biomaRt ensembldb
updated 20 months ago by ★ 4.1k • written 20 months ago by • 0
7
votes
6
replies
4.3k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 7 months ago by 700 • written 21 months ago by ▴ 20
0
votes
3
replies
1.3k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
22 months ago • updated 21 months ago sandmann.t ▴ 70
1
vote
0
replies
824
views
News: Ensembl 107 has been released
ensembldb
22 months ago Aleena ▴ 30
0
votes
1
reply
1.0k
views
bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
biomaRt ensembldb paralogues
updated 22 months ago by ★ 1.6k • written 22 months ago by • 0
0
votes
3
replies
3.0k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb
22 months ago elmfinds • 0
2
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0
replies
728
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
2.1 years ago Benjamin ▴ 30
2
votes
2
replies
1.1k
views
ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl' I'm on day two, can it be sped up?
ensembldb
2.2 years ago Matthew Thornton ▴ 360
0
votes
2
replies
2.7k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 2.2 years ago by • 0
9
votes
11
replies
6.0k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 9 weeks ago by 3.9k • written 2.3 years ago by ▴ 40
0
votes
2
replies
1.4k
views
Can't convert dog ensembl IDs into gene names
biomaRt ensembldb
updated 2.4 years ago by ★ 4.1k • written 2.4 years ago by • 0
0
votes
3
replies
1.4k
views
Error: package or namespace load failed for 'EnsDb.Mmusculus.v79'
EnsDb.Mmusculus.v79 EnsDb.Mmusculus.v75 ensembldb
updated 2.4 years ago by ★ 2.0k • written 2.4 years ago by • 0
1
vote
0
replies
805
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
2.4 years ago mchakiachvili ▴ 20
0
votes
1
reply
993
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 2.5 years ago by • 0
0
votes
3
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1.1k
views
Problem select / ensembl package
ensembldb
2.6 years ago yinnahm • 0
10
votes
18
replies
2.9k
views
ensembldb support for Ensembl's transcript_name column
ensembldb
updated 2.5 years ago by 16k • written 2.6 years ago by 42k
2
votes
3
replies
1.7k
views
biomart query in R is not matching ensembl website - missing results
ensembldb biomaRt
updated 2.6 years ago by ★ 6.5k • written 2.6 years ago by • 0
0
votes
3
replies
1.0k
views
Error using old ensembldb annotations with R 4.0 +
anno EnsDb.Hsapiens.v79 ensDb.HSapiens.v92 AnnotationDbi ensembldb
2.8 years ago rbenel ▴ 40
1
vote
9
replies
1.9k
views
How to filter EnsDb into another EnsDb object instead of GRange?
ens ensembldb EnsDb.Hsapiens.v86 EnsDb.Rnorvegicus.v75
3.0 years ago Ahdee ▴ 50
1
vote
0
replies
1.0k
views
News: Ensembl 104 has just been released!
ensembldb biomaRt
3.0 years ago mchakiachvili ▴ 20
2
votes
1
reply
1.5k
views
Retrieve gene description with ensembldb
biomaRt ensembldb AnnotationData
updated 3.1 years ago by ★ 2.0k • written 3.1 years ago by ▴ 510
1
vote
2
replies
1.1k
views
Unable to use ensembldb's "ensDbFromGff()" function on .gff file from NCBI
ensembldb RNASeq
3.1 years ago Torkel • 0
0
votes
2
replies
1.4k
views
News: Ensembl 103 has been released
biomaRt ensembldb Ensembl ensemblVEP Biomart
3.3 years ago • updated 3.1 years ago mchakiachvili ▴ 20
3
votes
2
replies
2.6k
views
Mapping Ensemble IDs with version numbers using ensembl annotation packages
AnnotationDbi ensembldb
3.3 years ago Ezgi ▴ 60
2
votes
2
replies
2.7k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 3.4 years ago by ★ 2.0k • written 3.4 years ago by • 0
50 results • Page 1 of 1
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Answer: Running ENmix with mouse methylation manifest: readidat error - Error in readman by minardsmitha ▴ 10
Well it turns out there is a typo in the manifest file name. This particular issue is resolved by correcting the typo. A new error now …
Answer: Documenting resources in an `ExperimentHub` package? by James W. MacDonald 66k
The easiest way to do that IMO is to use emacs/ESS (or I believe there is some newfangled thing called RStudio? Not personally familiar, bu…
Comment: ChAMP installation issue by shepherl 3.9k
We are still waiting for the goseq to respond to our requests but will take action next week if it is not resolved. ChAMP is currently una…
Comment: How to arrange multiple plots into one page in NOISeq? by baptiste.bidon • 0
After facing the same problem, I realise that you can direct your plot in the matrix with the *par()* option `par(..., mfg = c(1,2))`. If i…
Comment: ChAMP installation issue by Tahirah • 0
Hello. Could you please share how you managed to install ChAMP in R 4.4.0? I also have R 4.4.0 and Bioconductor 3.19 version and ChAMP fail…
Votes
how to control age and gender effect in expression data using DESeq2
Answer: Error retrieving ensembl gene id using biomaRt...
Comment: LRT, more than two conditions and pairwise comparisons
Answer: Control group between 2 batches have different expression in RNAseq data
Answer: How to remove batch effect to combine RNAseq data from 2 different experiments?
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