Showing : Ensembldb • reset
0
votes
0
replies
110
views
News: Ensembl 115 has been released!
ensembl ensembldb biomaRt
6 weeks ago Ensembl_Jorge • 0
0
votes
2
replies
598
views
Job: Job: Ensembl Genebuild Project Leader
JobPosting ensembldb
written 4 months ago by ▴ 30
1
vote
3
replies
1.4k
views
News: Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt ensembldb
written 5 months ago by ▴ 30
0
votes
0
replies
259
views
Job: Job: Ensembl Dataflow Coordinator
JobPosting ensembldb
4 months ago Aleena_Ensembl ▴ 30
0
votes
4
replies
1.7k
views
Biomart and ensembl not working?
ensembldb biomaRt
updated 9 months ago by 68k • written 9 months ago by • 0
0
votes
0
replies
860
views
News: Ensembl 113 has been released
ensembl ensembldb mart biomaRt
12 months ago Ensembl_Jorge • 0
1
vote
3
replies
1.8k
views
502 error biomaRt getLDS()
ensembldb biomaRt
updated 14 months ago by 68k • written 21 months ago by ▴ 10
0
votes
0
replies
631
views
Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
14 months ago Aleena_Ensembl ▴ 30
1
vote
1
reply
978
views
biomaRt getSequence(): Error in .lock2
ensembldb getSequence
updated 15 months ago by ★ 6.6k • written 15 months ago by ▴ 10
1
vote
0
replies
973
views
News: Ensembl 112 has been released.
ensembldb biomaRt ensemblrelease
17 months ago Aleena_Ensembl ▴ 30
2
votes
5
replies
1.0k
views
get BM error
ensembldb
updated 18 months ago by 68k • written 18 months ago by • 0
10
votes
41
replies
9.9k
views
Ensembl plants at annotationHub?
ensembl ensembldb plant arabidopsis thaliana annotationhub
updated 17 months ago by • 0 • written 7.0 years ago by ★ 4.1k
0
votes
1
reply
776
views
Convert transcriptomic bam to genomic bam?
ensembldb transcriptome genome coordinateconversion
updated 19 months ago by 43k • written 19 months ago by ▴ 10
0
votes
2
replies
976
views
Canonical transcripts Mus musculus
TxDb.Mmusculus.UCSC.mm9.knownGene ensembldb GenomicFeatures Mus_musculus
written 21 months ago by ▴ 10
2
votes
4
replies
1.7k
views
seqlevelsStyle() not working
ensembldb genomei GenomeInfoDb
written 21 months ago by ▴ 70
2
votes
3
replies
1.1k
views
NCBI protein to NCBI cDNA (Ensembl conversions would be great as well) in R
Rstudio cDNA ensembldb NCBI
23 months ago R_Page • 0
4
votes
6
replies
3.4k
views
Conversion between different types of bioinformatic forms. (eg. NCBI protein to Ensembl protein) in R
RStudio convert ensembldb NCBI
updated 13 months ago by • 0 • written 24 months ago by • 0
0
votes
4
replies
1.6k
views
Retrieve gene ontologies (GO) for genes and a species by REST API
GO ensembldb
2.0 years ago Rockbar • 0
0
votes
10
replies
1.9k
views
ensembldb::getGenomeTwoBitFile() not working for many species
AnnotationHubSoftware ensembldb
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
7
votes
6
replies
8.9k
views
Conversion of UniProt to Ensembl
biomaRt ensembldb UniProt.ws
updated 2.1 years ago by 700 • written 3.2 years ago by ▴ 20
3
votes
1
reply
5.8k
views
Mouse to Human Genes using bioconductor
ensembldb
updated 2.3 years ago by 68k • written 2.3 years ago by ▴ 10
0
votes
1
reply
1.1k
views
Relationship between gene_id and transcript_id genomic coordinates
Rsubread ensembldb
updated 2.3 years ago by 68k • written 2.3 years ago by • 0
0
votes
1
reply
3.0k
views
News: News:Ensembl 110 has been released
ensembldb biomaRt
updated 2.3 years ago by 43k • written 2.3 years ago by ▴ 30
0
votes
2
replies
2.4k
views
Access Ensembl GRCH38 Version 87 Using BiomaRt
biomaRt ensembldb RNA ensembl
updated 2.6 years ago by ★ 2.1k • written 2.6 years ago by • 0
0
votes
0
replies
1.2k
views
BiomaRt - Problem to access homolog lists
biomaRt ensembldb
2.7 years ago ginie.dub • 0
1
vote
0
replies
1.2k
views
News: Ensembl 109 has been released
ensembldb
2.7 years ago Aleena_Ensembl ▴ 30
0
votes
3
replies
2.8k
views
Uniprot IDs and NCBI taxonomy IDs to coding sequences
ensembldb biodbUniprot
updated 2.8 years ago by 68k • written 2.8 years ago by • 0
2
votes
4
replies
1.3k
views
Successor of genesBy Defunct Function
ensembldb
updated 2.8 years ago by 16k • written 2.8 years ago by ★ 1.6k
5
votes
3
replies
2.8k
views
Problem obtaining NCBI gene IDs from Ensembl version 107
biomaRt ensembldb ensembl
3.0 years ago • updated 2.8 years ago jamie.gearing ▴ 60
1
vote
3
replies
1.6k
views
Convert Chromosome postion to gene symbol
biomaRt ensembldb
2.9 years ago mbansal • 0
2
votes
3
replies
3.0k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.8 years ago by • 0 • written 2.9 years ago by ▴ 10
1
vote
2
replies
1.3k
views
News: Ensembl 108 has been released!
biomaRt ensembldb ensembl
written 3.0 years ago by ▴ 10
0
votes
5
replies
3.4k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 3.1 years ago by ★ 4.1k • written 3.1 years ago by ▴ 30
0
votes
4
replies
1.8k
views
GO data for fgsea: should ensembl data be augmented to contain parent terms?
biomaRt GO ensembldb fgsea
3.1 years ago dario.beraldi • 0
2
votes
3
replies
3.8k
views
GSEA only returning 1 GO term - unable to map Ensembl IDs with decimals?
AnnotationDbi GO clusterProfiler enrichplot ensembldb
updated 3.1 years ago by ▴ 150 • written 3.1 years ago by ▴ 10
0
votes
1
reply
1.1k
views
getBM Error with certain attribute combinations
biomaRt ensembldb
updated 3.2 years ago by ★ 5.0k • written 3.2 years ago by • 0
0
votes
3
replies
2.5k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
3.3 years ago • updated 3.2 years ago sandmann.t ▴ 70
1
vote
0
replies
1.2k
views
News: Ensembl 107 has been released
ensembldb
3.3 years ago Aleena_Ensembl ▴ 30
0
votes
1
reply
1.8k
views
bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
biomaRt ensembldb paralogues
updated 3.3 years ago by ★ 1.6k • written 3.3 years ago by • 0
0
votes
3
replies
4.5k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation EnsDb.Hsapiens.v86 Bioconductor package ensembldb
3.3 years ago elmfinds • 0
2
votes
0
replies
1.1k
views
News: News:Ensembl 106 has just been released!
ensembl biomaRt ensembldb
3.6 years ago Benjamin ▴ 30
2
votes
2
replies
2.0k
views
ensembldb to make the EnsDb for Human Version 105 using 'fetchTablesFromEnsembl' I'm on day two, can it be sped up?
ensembldb
3.7 years ago Matthew Thornton ▴ 380
0
votes
2
replies
4.1k
views
How to get the rsID of 4 million SNPA
ensembldb SNP SNPData genomes
written 3.7 years ago by • 0
9
votes
14
replies
9.9k
views
Where can I find EnsDb.Hsapiens.v105?
Ensembl Rstudio ensembldb AnnotationHub ensdb
updated 15 months ago by 4.2k • written 3.8 years ago by ▴ 40
0
votes
2
replies
2.3k
views
Can't convert dog ensembl IDs into gene names
biomaRt ensembldb
updated 3.9 years ago by ★ 5.0k • written 3.9 years ago by • 0
0
votes
3
replies
2.0k
views
Error: package or namespace load failed for 'EnsDb.Mmusculus.v79'
EnsDb.Mmusculus.v79 EnsDb.Mmusculus.v75 ensembldb
updated 3.9 years ago by ★ 2.1k • written 3.9 years ago by • 0
1
vote
0
replies
1.2k
views
News: Ensembl 105 has just been released!
ensembl biomaRt ensembldb
3.9 years ago mchakiachvili ▴ 20
0
votes
1
reply
1.5k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 4.0 years ago by • 0
10
votes
18
replies
4.3k
views
ensembldb support for Ensembl's transcript_name column
ensembldb
updated 4.0 years ago by 16k • written 4.0 years ago by 43k
0
votes
3
replies
1.8k
views
Problem select / ensembl package
ensembldb
4.0 years ago yinnahm • 0
101 results • Page 1 of 3
Recent ...
Replies
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
I can reproduce this and have opened an issue on the code base https://github.com/Bioconductor/support.bioconductor.org/issues/112
Comment: "Watched Tags" are being erased rather than updated by shepherl 4.2k
we can investigate this issue. thank you for bringing it to our attention
Comment: deseq2 filter the low counts by Michael Love 43k
> But within each comparison (contrast), if I trace some DEGs back to the original salmon merged gene counts (or even to normalised counts)…
Comment: deseq2 filter the low counts by empty_mt • 0
Thank you for you suggestion to look at the pre-filtering section in the DESeq2 vignettes - am I missing something? I have 6 treatments, …
Comment: deseq2 filter the low counts by Michael Love 43k
Have you seen this part: https://bioconductor.org/packages/release/bioc/vignettes/DESeq2/inst/doc/DESeq2.html#pre-filtering
Votes
Bioconductor 3.22 Released!
Bioconductor 3.22 Released!
Comment: "Watched Tags" are being erased rather than updated
Comment: deseq2 filter the low counts
Answer: DESeq2 interactions
Awards • All
Popular Question to Gordon Smyth 53k
Popular Question to shepherl 4.2k
Popular Question to Hervé Pagès 16k
Popular Question to Ou, Jianhong ★ 1.3k
Popular Question to Maria Doyle ▴ 100
Locations • All
WEHI, Melbourne, Australia, 3 hours ago
The city by the bay, 6 hours ago
Barcelona, Spain, 8 hours ago
United States, 9 hours ago
United States, 11 hours ago
Traffic: 1015 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6