Showing : Epigenetics • reset
3
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DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
7 months ago Jitendra ▴ 10
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
8.4 years ago Yassen Assenov ▴ 10
1
vote
1
reply
347
views
Further analysis after limma regression output
statistics Epigenetics limma
updated 7 months ago by 65k • written 7 months ago by ▴ 10
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0
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Bioinformatics positions
Microarray Genetics Proteomics Epigenetics Microarray Genetics Proteomics Epigenetics
16.4 years ago French, Jef NIH/NIEHS ▴ 30
0
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1.8k
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Bioinformatics Positions, National Cancer Centre Singapore
Microarray Epigenetics Cancer Microarray Epigenetics Cancer
16.0 years ago Julian Lee ▴ 140
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1
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1.2k
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Fwd: biomaRt column order
Epigenetics biomaRt Epigenetics biomaRt
15.8 years ago steffen@stat.Berkeley.EDU ▴ 600
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[ Re: Fwd: biomaRt column order]
Epigenetics biomaRt Epigenetics biomaRt
15.8 years ago steffen@stat.Berkeley.EDU ▴ 600
0
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1.3k
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Create affyBatch from mouse exon array data using ReadAffy or extractAffyBatch() from aroma.affymetrix
Epigenetics Cancer probe affy xps Epigenetics Cancer probe affy xps
15.8 years ago Martin Morgan 25k
0
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1
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1.3k
views
Prokaryotic_Rhodobacter capsulatus GEP
Epigenetics cdf affy makecdfenv plier affxparser preprocessCore Epigenetics cdf affy
updated 15.4 years ago by ▴ 140 • written 15.4 years ago by 65k
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0
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1.2k
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sd==0 for some probesets when using gcrma
Microarray Proteomics Epigenetics Normalization GO Cancer hgu95av2 affy graph gcrma GO
15.4 years ago Dick Beyer ★ 1.4k
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0
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1.2k
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Bioinformatics postdoc in Brussels
Sequencing Epigenetics Cancer Breast Sequencing Epigenetics Cancer Breast
15.1 years ago Vincent Detours ▴ 80
0
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0
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1.7k
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Post-doc position in Paris
Sequencing Epigenetics Cancer Breast DECIPHER Sequencing Epigenetics Cancer Breast
14.8 years ago Joern Toedling ▴ 450
0
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2
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2.2k
views
pd.hugene.1.0.st.v1
Epigenetics Annotation oligo Epigenetics Annotation oligo
updated 14.7 years ago by ★ 4.3k • written 14.7 years ago by ★ 1.1k
0
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0
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qPCR Events and 30% Discount on qPCR workshops
miRNA qPCR Epigenetics GO Visualization Network probe microRNA miRNA qPCR Epigenetics
14.5 years ago qPCR Platform - the reference in real-t… ▴ 170
0
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3
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2.6k
views
edgeR - multiple comparisions
Epigenetics GO edgeR Epigenetics GO edgeR
updated 12.9 years ago by ▴ 320 • written 12.9 years ago by ▴ 260
0
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0
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1.3k
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Head of Junior Research Group - Bioinformatics
Epigenetics Epigenetics
12.7 years ago Qiong Lin ▴ 10
0
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0
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1.4k
views
[job] Postdoc position on the bioinfomatics of epigenetic circuits in genome programming and reprogramming at the European Institute of Oncology in M…
RNASeq ChIPSeq Epigenetics Cancer chipseq SANTA RNASeq ChIPSeq Epigenetics Cancer SANTA
12.7 years ago stefano iacus ▴ 430
0
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0
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1.8k
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4 PhD positions in cancer computational biology
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
12.7 years ago mattia pelizzola ▴ 200
0
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0
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1.4k
views
Position Assistant Professor Bioinformatics
Epigenetics Epigenetics
12.6 years ago Martin Zenke ▴ 10
0
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3
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1.4k
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how to install gnGNF1a cdf and probe files to a recent version of R (2.13.1)?
Epigenetics cdf Epigenetics cdf
updated 12.4 years ago by 65k • written 12.4 years ago by ▴ 30
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IS PROGRAMMER/ANALYST I / 40 HOUR / DAY / BWH - CHANNING LABORATORY
Epigenetics Annotation Network Epigenetics Annotation Network
12.2 years ago Guest User ★ 13k
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0
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1.4k
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[Course] CSAMA 2013: Computational Statistics for Genome Biology (11th edition) Brixen, Italy, June 24-28th 2013
Sequencing Epigenetics Cancer Sequencing Epigenetics Cancer
11.2 years ago stefano iacus ▴ 430
0
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0
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1.5k
views
Job: Bioinformatics Analyst at Johns Hopkins Medical School (Masters or Ph.D.)
Sequencing Epigenetics PROcess Sequencing Epigenetics PROcess
10.0 years ago Brian Herb ▴ 80
0
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0
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1.6k
views
ChAMP: Error using champ.norm() function
ChAMP methylation epigenetics
8.5 years ago jdangelo • 0
0
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0
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2.7k
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Job: Bioinformatics Scientist position at Johns Hopkins
R USA Hopkins GI Cancer Epigenetics Job
8.1 years ago asharm37 • 0
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0
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1.4k
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News: ChAMP2 is online
epigenetics EPIC 450K ChAMP News
7.6 years ago Yuan Tian ▴ 90
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1
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1.6k
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News: Plotly uprading issue in ChAMP package
ChAMP Epigenetics plotly Shiny GUI News
7.5 years ago • updated 7.3 years ago Yuan Tian ▴ 90
0
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1
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1.7k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.1 years ago by ▴ 60 • written 7.2 years ago by ▴ 120
0
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0
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1.1k
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Job: PhD computational position - Milan
epigenetics transcription computational biology Job
6.8 years ago mattia pelizzola ▴ 200
0
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0
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1.0k
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Beta values and M values cluster differently
methylationEPIC minfi microarray epigenetics EPIC
5.1 years ago rmf ▴ 20
0
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0
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820
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Best normalisation method
microarray methylationEPIC epigenetics minfi EPIC
5.1 years ago rmf ▴ 20
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0
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977
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Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.2 years ago Shamith.Samarajiwa ▴ 180
0
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2
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1.7k
views
Beyond dmpFinder for methylation analysis, using limma for covariates
minfiDataEPIC arrays limma minfi Epigenetics
updated 3.4 years ago by 50k • written 3.4 years ago by ▴ 20
0
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0
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707
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.1 years ago Jitendra ▴ 10
0
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0
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561
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normalisation options in RnBeads
Epigenetics RnBeads R Bioconducter
2.1 years ago Jitendra ▴ 10
0
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0
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420
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rnbeads inference
epigenetics RnBeads
15 months ago Jitendra ▴ 10
0
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0
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790
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Job: Bioinformatics Research Scientist- Epigenetics Group
HiC Epigenetics HiCHIP ChIPSeq
22 months ago xubeisi • 0
0
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3
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936
views
batch effect in EPIC array data
statistics Epigenetics R
updated 14 months ago by ▴ 730 • written 14 months ago by ▴ 10
0
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8
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1.9k
views
error in RnBeads installation
Epigenetics RnBeads R
2.1 years ago Jitendra ▴ 10
0
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0
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592
views
Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
17 months ago whduke • 0
0
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0
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828
views
Job: Postdoctoral Fellow in Epigenomcis/Neurobiology (MGH/Harvard Medical School, Boston)
GenomicVariation SingleCell Autism Neurogenesis Epigenetics
18 months ago sudhir.thakurela • 0
0
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0
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555
views
How to find regulatory region position and associated genes for CpG sites
Epigenetics R Bioconducter
14 months ago Jitendra ▴ 10
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6
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1.3k
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regression analysis for epic array methylation data using limma
limma Epigenetics STATISTICS R
23 months ago Jitendra ▴ 10
0
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5
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594
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 6 months ago by 65k • written 6 months ago by ▴ 10
0
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4
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347
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limma with interaction term
R biostatistics limma Epigenetics
11 weeks ago • updated 8 weeks ago Jitendra ▴ 10
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0
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1.6k
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Senior Bioinformatics Research Scientist Position at Garvan Institute, Australia
Epigenetics Bayesian Cancer Breast Epigenetics Bayesian Cancer Breast
16.3 years ago Jean Yee Hwa Yang ▴ 130
0
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0
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474
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combat for batch effect correction in EPIC array data
Epigenetics combat EPIC
13 months ago Jitendra ▴ 10
0
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0
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1.1k
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browseGenome width question (rtracklayer)
Epigenetics GO hgu95av2 GLAD rtracklayer Epigenetics GO hgu95av2 GLAD rtracklayer
15.2 years ago Michael Lawrence ▴ 620
0
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0
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1.9k
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job: head of core facility bioinformatics (Mainz/Germany)
Epigenetics Infrastructure Epigenetics Infrastructure
10.3 years ago Holger Klein ▴ 20
49 results • Page 1 of 1
Recent ...
Replies
Answer: Dominance Index for Shotgun Metagenomics Data by Leo Lahti ▴ 40
1. Note that Simpson's dominance index (\lambda) is a different index than inverse Simpson (1/\lambda) or reciprocal Simpson (1-\lambda). T…
Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0
Thank you very much - that worked perfectly! Word of warning to those who try this: it screws up the other legends because of the markdown …
Answer: PCA plot suggestions by Michael Love 41k
For help with interpretation and design of analysis, I recommend working with a local statistician. Due to time restrictions, I can only…
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length by ussarizona ▴ 10
Hi Michael, Yes, I could figure it out what does the error mean. In my matrix I had the first colum GeneID while in my condition I only h…
Answer: Deseq2. decontXcounts not integers. Useful alternative? by Michael Love 41k
Another option would be to put the per sample estimated contamination in the design. This is for example how RUV etc help remove spurious D…
Votes
Answer: Dominance Index for Shotgun Metagenomics Data
Answer: Math expression in shapeCustom legend in EnhancedVolcano
Comment: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
Comment: Deseq2. decontXcounts not integers. Useful alternative?
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
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Popular Question to Leo Lahti ▴ 40
Scholar to James W. MacDonald 65k
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