Showing : Lumi • reset
0
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2
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2.5k
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No methods found in package ‘RSQLite’ for request: ‘dbListFields’ when loading ‘lumi’
RSQLite lumi
3.5 years ago Rohmatul • 0
6
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3
replies
1.4k
views
GEOquery: preprocessing log of imported data
GEOquery microarray lumi affy limma
updated 3.9 years ago by 21k • written 3.9 years ago by ▴ 40
2
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1
reply
977
views
lumi: Importing Methylation EPIC IDAT files
lumi EPIC Methylation
4.0 years ago Zach Roe ▴ 10
0
votes
0
replies
871
views
lumi / RSQLite warning
lumi
4.1 years ago stewart999 ▴ 10
1
vote
4
replies
1.7k
views
download data from GEO Illumina platform
lumi illumina human ht-12 v4
updated 5.4 years ago by ▴ 50 • written 5.4 years ago by • 0
1
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2
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1.5k
views
lumi package fails to load because of a missing dependency (bumphunter)
lumi methylumi
updated 5.5 years ago by ▴ 50 • written 5.5 years ago by ▴ 30
1
vote
4
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1.8k
views
Trouble loading 'lumi' package
lumi illumina hdf5array
updated 5.7 years ago by 65k • written 5.7 years ago by ▴ 30
2
votes
5
replies
2.3k
views
Errors in Processing GSE36411_non-normalized.txt file of Illumina data using lumi Package and limma package
limma lumi illumina gene expression data
updated 2.4 years ago by ▴ 10 • written 5.8 years ago by • 0
0
votes
1
reply
1.3k
views
Analysing microarray raw data: GSEXXXX_non-normalized.txt
lumi microarray GSE
updated 6.2 years ago by 50k • written 6.2 years ago by • 0
2
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4
replies
2.6k
views
Problem in installing Bioconductor packages due to "IRanges"
lumi methylumi methyAnalysis
6.3 years ago topijush ▴ 10
1
vote
3
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2.4k
views
Reading Illumina HT12 V4.0 Data from GEO into Lumi
lumi geoquery geo illumina human ht-12 v4 gene expression
updated 6.5 years ago by 50k • written 6.5 years ago by • 0
0
votes
1
reply
1.2k
views
Add gene information to most expressed gene list (packages lumi and GOstats)
annotation lumi GOstats
updated 6.6 years ago by 65k • written 6.6 years ago by • 0
0
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0
replies
1.3k
views
Can't get the lumi and methylumi packages to work.
lumi methylumi
7.0 years ago gitteba • 0
0
votes
0
replies
2.4k
views
lumiR error Error in gregexpr("\t", dataLine1)[[1]] : subscript out of bounds
lumi illumina normalization beadarray
7.0 years ago hkarakurt ▴ 20
2
votes
1
reply
1.4k
views
Differential Expression Analysis
differential gene expression microarray lumi illumina
updated 7.1 years ago by 65k • written 7.1 years ago by • 0
1
vote
10
replies
3.0k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.1 years ago by ▴ 170 • written 7.1 years ago by ▴ 10
1
vote
6
replies
1.9k
views
minfi and lumi not available for version 3.3.2
minfi lumi
updated 7.2 years ago by 25k • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.3k
views
Problems in using lumi for importing illumina raw data
beadarray lumi normalization microarray illumina
updated 7.3 years ago by 50k • written 7.3 years ago by ▴ 110
4
votes
5
replies
1.8k
views
Can't install 'lumi'
lumi
updated 7.4 years ago by 25k • written 7.5 years ago by ▴ 10
0
votes
1
reply
1.2k
views
Annotation for Mouse Illumina Expression Chip V6.1.1
bead chip Annotation Mouse Lumi probeID2nuID
updated 7.7 years ago by ▴ 120 • written 7.8 years ago by • 0
0
votes
2
replies
1.3k
views
lumi: how to get number of beads information?
lumi minfi
updated 7.8 years ago by ★ 6.5k • written 7.8 years ago by • 0
0
votes
0
replies
993
views
Lumi Control Data
lumi illumina microarray
8.0 years ago m.a.bentley • 0
0
votes
1
reply
1.1k
views
Lumi error in importMethylIDAT
lumi methylation illumina
updated 8.0 years ago by 65k • written 8.0 years ago by • 0
1
vote
2
replies
2.0k
views
Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
8.1 years ago Adam • 0
2
votes
4
replies
1.6k
views
read bead-level data directly by lumi
bead-level GEO lumi
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by • 0
1
vote
2
replies
1.4k
views
readIllumina couln't read bead-level txt file from GEO raw data
beadarray bead-level GEO lumi
updated 8.1 years ago by ★ 6.5k • written 8.1 years ago by • 0
1
vote
2
replies
2.1k
views
unable to find Lumi package in R
lumi
updated 8.2 years ago by ★ 13k • written 8.2 years ago by • 0
0
votes
4
replies
2.8k
views
Illumina ID Mapping library
lumi illumina beadarray microarray
8.2 years ago kritikamish99 ▴ 10
0
votes
2
replies
1.4k
views
Ilumina microarray gene expression
microarray lumi
updated 8.2 years ago by 65k • written 8.2 years ago by ▴ 10
3
votes
12
replies
6.2k
views
packages installation problem
limma Rqc beadarray Lumi
updated 8.2 years ago by ▴ 70 • written 8.2 years ago by • 0
0
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0
replies
1.2k
views
Question about lumiT warning message
lumi
8.3 years ago clevy ▴ 10
0
votes
0
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896
views
"Error: object 'nuID' not found" error when using `returnAllMatches=TRUE` in `IlluminaID2nuID()`
lumi lumihumanidmapping
8.5 years ago aush ▴ 40
0
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0
replies
1.0k
views
no chip information in lumiHumanIDMapping?
lumi lumihumanidmapping
8.5 years ago aush ▴ 40
0
votes
0
replies
1.7k
views
Error in the Illumina ID to Gene Symbol mapping through lumi package
lumi illuminahumanv3 lumihumanidmapping
8.7 years ago gokcen.eraslan ▴ 10
2
votes
2
replies
2.0k
views
Lumi - Can't write to pData Slot
lumi
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 370
2
votes
8
replies
3.6k
views
Problems importing Illumina raw data with lumi R package
Illumina Human HT-12 v4 lumi limma microarray
updated 8.9 years ago by 50k • written 8.9 years ago by ▴ 830
1
vote
3
replies
1.8k
views
lumiR.batch fails after upgrade to R v3.2.0 and lumi v2.20.0
lumi
9.0 years ago Jeremy Martinson • 0
2
votes
7
replies
2.6k
views
Removing samples from S4 object (in lumi)
lumi S4
9.1 years ago Chi Hong • 0
0
votes
1
reply
1.2k
views
lumi: can't see sample corr pairwise and MAplot plots
lumi plot
updated 9.2 years ago by 50k • written 9.2 years ago by ▴ 100
0
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2
replies
1.5k
views
lumiHumanIDMapping/lumiHumanAll for R-3.1.2
lumi lumiHumanIDMapping lumiHumanAll
9.3 years ago Frederico Moraes Ferreira ▴ 100
0
votes
1
reply
919
views
Issues with lumi package
lumi
9.4 years ago Sylvain Foisy ▴ 80
2
votes
20
replies
10k
views
problem loading lumi package, Error : object ‘sqliteQuickSQL’ is not exported by 'namespace:RSQLite'
lumi
updated 9.0 years ago by • 0 • written 9.5 years ago by ▴ 10
0
votes
1
reply
1.8k
views
how to set up sampleInfo for methylation array in illumina 450K
lumi lumi
updated 10.0 years ago by ▴ 440 • written 10.0 years ago by ★ 13k
1
vote
1
reply
1.8k
views
Coercion of MethyLumiSet to MethyLumiR changes raw methylation values?
Normalization probe lumi Normalization probe lumi
updated 9.2 years ago by • 0 • written 10.1 years ago by ▴ 20
0
votes
5
replies
2.0k
views
Coercion lumi/minfi objects
lumi minfi lumi minfi
updated 10.2 years ago by ★ 4.2k • written 10.2 years ago by ▴ 10
0
votes
0
replies
1.5k
views
EximiR - Limma - miRCURY LNA - Exiqon
miRNA Microarray Cancer limma lumi ExiMiR miRNA Microarray Cancer limma lumi ExiMiR
10.3 years ago Paolo Kunderfranco ▴ 350
0
votes
0
replies
1.8k
views
Illumina Expression analysis from iDAT files
Normalization limma beadarray lumi illuminaio Normalization limma beadarray lumi
10.4 years ago Kasper Daniel Hansen ★ 6.5k
3
votes
9
replies
5.6k
views
Illumina Expression analysis from iDAT files
beadarray lumi illuminaio idat
updated 2.4 years ago by 50k • written 10.4 years ago by 21k
0
votes
2
replies
4.4k
views
Annotate - gene name to ENSEMBL
Microarray GO lumi Microarray GO lumi
updated 10.5 years ago by ▴ 400 • written 10.5 years ago by ▴ 180
0
votes
10
replies
2.2k
views
MethyLumiM to MethyLumiSet?
convert lumi methylumi minfi wateRmelon convert lumi methylumi minfi wateRmelon
updated 10.5 years ago by ★ 4.2k • written 10.5 years ago by ▴ 190
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Comment: Deseq2. decontXcounts not integers. Useful alternative? by ATpoint ★ 4.0k
I do not know this decontamination tool you use but generally: If these counts are basically "corrected" raw counts in the sense that they'…
Answer: Improving the design matrices vignette in RNAseq123 by Gordon Smyth 50k
Thanks to Shian Su, we have confirmed that the problem in the design matrices vignette html is caused by a bug in knitr 1.44 (to do with sp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! I'll review my code from top to bottom.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
So basically you are using HTML markup to set your subscripts and whatnot, and then `element_markdown` does the rest.
Comment: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k
Oh snap. Foiled again. Here it is with spaces & ge ; and & lt ;
Votes
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
biomaRt error: database disk image is malformed
Comment: biomaRt : No lock file for BiocFileCache
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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