Showing : OpenCyto • reset
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295
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OpenCyto polyFunctions
openCyto
9 months ago Albert • 0
0
votes
0
replies
551
views
How to fix Flow-Data autoplot heat map
FlowCytometry flowCore openCyto ggcyto
18 months ago Dennis.hinkel • 0
1
vote
1
reply
618
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creating a NOT gate for gating out a single quadrant in a quadrant gate openCyto
FlowCytometry Opencyto
updated 18 months ago by ★ 3.9k • written 18 months ago by • 0
0
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0
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454
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gate_quad_sequential as parent gate for downstream gating in opencyto CSV template
opencyto FlowCytometry
18 months ago Noël • 0
0
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0
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445
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openCyto 2.8.0: error in prior_flowclust
prior_flowclust openCyto
22 months ago martin.andres • 0
0
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2
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677
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openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
3.9 years ago geoffreylewen • 0
0
votes
1
reply
688
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FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
updated 4.0 years ago by ▴ 310 • written 4.1 years ago by • 0
7
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3
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1.3k
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Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
updated 4.0 years ago by ▴ 310 • written 4.0 years ago by ▴ 30
4
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5
replies
1.1k
views
Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
updated 4.1 years ago by ▴ 310 • written 4.1 years ago by • 0
1
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5
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1.5k
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custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
4.7 years ago k.teijgeler • 0
5
votes
11
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1.8k
views
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
updated 4.9 years ago by ★ 1.3k • written 5.0 years ago by • 0
0
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6
replies
1.5k
views
How to select left hand side of mindensity2 gate
openCyto mindensity
updated 5.2 years ago by ★ 1.3k • written 5.2 years ago by ▴ 20
0
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7
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1.4k
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RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
updated 5.3 years ago by ★ 1.3k • written 5.4 years ago by • 0
3
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3
replies
1.7k
views
Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
updated 5.6 years ago by ★ 1.3k • written 6.5 years ago by ▴ 10
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4
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2.7k
views
Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
updated 6.2 years ago by ★ 1.3k • written 6.6 years ago by ▴ 70
0
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6
replies
1.7k
views
opencyto Error in .validity_check_alias
opencyto
updated 6.6 years ago by ★ 1.3k • written 6.6 years ago by ▴ 20
2
votes
5
replies
1.9k
views
How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 10
1
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5
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1.9k
views
Measure Median Fluorescence Intensity in openCyto
opencyto
updated 6.8 years ago by ★ 1.3k • written 6.8 years ago by ▴ 10
0
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1
reply
885
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Fail to load openCyto
opencyto bioconductor
updated 6.8 years ago by 25k • written 6.8 years ago by ▴ 10
0
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1
reply
2.6k
views
R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by • 0
1
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1
reply
1.2k
views
Add flowclust gate to gatingset
opencyto flowclust
updated 6.9 years ago by ★ 1.3k • written 6.9 years ago by ▴ 20
2
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1
reply
1.1k
views
openCyto displaying gating panels
opencyto
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by • 0
2
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1
reply
1.0k
views
openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
updated 7.3 years ago by ★ 1.3k • written 7.3 years ago by • 0
2
votes
4
replies
1.4k
views
Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
updated 7.4 years ago by ★ 1.3k • written 7.4 years ago by • 0
1
vote
4
replies
1.5k
views
openCyto trouble importing xml file
opencyto bioconductor R
7.4 years ago Rivka • 0
0
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1
reply
1.2k
views
using flowIncubator package's function
opencyto flow cytometry R package installation
updated 7.8 years ago by ★ 1.3k • written 7.8 years ago by • 0
1
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5
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1.8k
views
openCyto - flowclust.2d throws errors
opencyto flow cytometry
updated 8.0 years ago by • 0 • written 8.0 years ago by ▴ 30
0
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1
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2.2k
views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
updated 8.0 years ago by ★ 1.3k • written 8.0 years ago by • 0
1
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3
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1.4k
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OpenCyto - getting gate coordinates
opencyto
8.0 years ago Ulrik Stervbo ▴ 30
2
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1
reply
1.7k
views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
updated 8.1 years ago by ▴ 10 • written 8.1 years ago by ▴ 10
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1
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1.9k
views
FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
8.2 years ago Jiang, Mike ★ 1.3k
1
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2
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1.2k
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openCyto - samples with low cell counts
flowcytometry opencyto
8.3 years ago Jiang, Mike ★ 1.3k
0
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3
replies
2.0k
views
openCyto: compilation failure during installation
opencyto rhdf5 compilation error
8.4 years ago • updated 8.3 years ago gmirkin • 0
1
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9
replies
3.2k
views
Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
8.3 years ago anders.tondell ▴ 30
4
votes
8
replies
2.8k
views
openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
updated 8.4 years ago by ▴ 240 • written 8.5 years ago by • 0
0
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5
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2.0k
views
openCyto fails to load
opencyto bioclite
updated 8.5 years ago by • 0 • written 8.5 years ago by ▴ 20
0
votes
4
replies
1.6k
views
Issues parsing workspace in openCyto
opencyto
8.8 years ago JK ▴ 10
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0
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1.4k
views
openCyto transitional gate
flow cytometry opencyto
9.1 years ago Jiang, Mike ★ 1.3k
0
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0
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1.3k
views
Re: FlowStats help
flowclust opencyto flowcytometry
9.2 years ago Jiang, Mike ★ 1.3k
5
votes
4
replies
3.1k
views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
updated 9.3 years ago by ▴ 150 • written 9.3 years ago by ▴ 10
4
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1
reply
1.7k
views
News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
9.6 years ago Greg Finak ▴ 150
1
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0
replies
1.7k
views
Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
9.7 years ago Jiang, Mike ★ 1.3k
0
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1
reply
1.4k
views
OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
9.9 years ago Jiang, Mike ★ 1.3k
0
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0
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925
views
Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
10.1 years ago Jiang, Mike ★ 1.3k
44 results • Page 1 of 1
Recent ...
Replies
Answer: Once again a "Model matrix not full rank" by swbarnes2 ★ 1.3k
Replicate numbers, like the 1 in control_1 are fine in sample names, but never add them to anything else in colData. From the computer's p…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by Gordon Smyth 50k
I'll add a little bit of general advice to James' answer. You seem to have the misunderstanding that you can change the design matrix but …
Answer: package goseq seems to be not available on the latest version of R by Gordon Smyth 50k
It is true that goseq isn't available for Bioc 3.19. That is because goseq depends on txbmaker, which is itself not yet available for Bioc…
Answer: limma Intercept vs No-intercept models completely changing DMR results? by James W. MacDonald 65k
This part: ``` design_intercept <- model.matrix(~Alt+Sex+Age+PC1, data=targets_Sherpa) colnames(design_intercept) <- c("AltSHP_LA","Al…
Comment: CombineArrays for EPIC and EPIC V2 by Kim • 0
Thank you Tim, this is a great help in getting me started!
Votes
Answer: limma Intercept vs No-intercept models completely changing DMR results?
Answer: CombineArrays for EPIC and EPIC V2
Answer: Too many significant genes when integrating gtex and tcga
Comment: Too many significant genes when integrating gtex and tcga
A: Print Differentially Expressed Exons From Dexseq Results
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