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PACKAGES
•
reset
1
vote
11
replies
2.1k
views
Bioconductor Software Packages raw (not html) detail view?
packages
details
9.2 years ago • updated 8.8 years ago
smoretti
▴ 10
2
votes
7
replies
1.3k
views
Is there a way to find corresponding svn revision for the current /devel/src/contrib/PACKAGES and /release?
svn
PACKAGES
updated 9.2 years ago by
Dan Tenenbaum
★ 8.2k • written 9.2 years ago by
levk
• 0
4
votes
7
replies
15k
views
package ‘edgeR’ is not available (for R version 3.1.2)
edgeR
packages
9.2 years ago
Patrick Schorderet
▴ 20
1
vote
6
replies
2.2k
views
Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 2.1 years ago by
Marcel Ramos
690 • written 2.1 years ago by
jose
▴ 10
3
votes
6
replies
2.2k
views
List of package names with versions
packages
updated 8.2 years ago by
Sushant Pawar
• 0 • written 8.2 years ago by
nathan.watsonhaigh
• 0
1
vote
5
replies
3.0k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
bs14ab
• 0
12
votes
5
replies
1.9k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
6.5 years ago
shepherl
3.9k
3
votes
4
replies
1.5k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.1 years ago
dakarai_esgdaille
▴ 10
2
votes
4
replies
2.4k
views
Package RnBeads not available for R 3.1.2?
RnBeads
packages
R 3.1.2
8.8 years ago
bmreilly
• 0
0
votes
4
replies
1.5k
views
Newbee question: how to output/write data (measureents) to a text file?
packages
8.3 years ago
Reinert Korsnes
• 0
0
votes
4
replies
2.2k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install
packages
Mus.musculus
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
443606623
• 0
1
vote
4
replies
1.5k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
4.7 years ago
mohammedtoufiq91
▴ 10
0
votes
3
replies
1.3k
views
Cant update old packages
software error
packages
update
updated 3.8 years ago by
James W. MacDonald
65k • written 3.8 years ago by
bs14ab
• 0
3
votes
3
replies
1.3k
views
Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 3.8 years ago by
Laurent Gatto
1.6k • written 4.0 years ago by
sreedta8
▴ 10
3
votes
3
replies
1.5k
views
Question regarding best bioconductor package for RNA-seq
rna-seq
packages
updated 7.2 years ago by
b.nota
▴ 360 • written 7.2 years ago by
Maximilian
▴ 10
0
votes
2
replies
1.2k
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
6.5 years ago
shepherl
3.9k
1
vote
2
replies
2.4k
views
Error : object path is not exported by namespace:Rsamtools
packages
installation problem
rsamtools
chippeakanno
ensembldb
6.4 years ago
inzirio
▴ 10
2
votes
2
replies
1.3k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment
packages
granges
iranges
updated 6.4 years ago by
Aaron Lun
★ 28k • written 6.4 years ago by
rbronste
▴ 60
0
votes
2
replies
1.9k
views
Issues installing packages miniconda environment
bioclite
deseq2
miniconda
packages
6.2 years ago
cpat
• 0
2
votes
2
replies
1.0k
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
4.5 years ago
shepherl
3.9k
0
votes
2
replies
1.3k
views
Unable to install package
packages
installation
GenomeGraphs
updated 4.2 years ago by
James W. MacDonald
65k • written 4.2 years ago by
alex
• 0
0
votes
2
replies
1.1k
views
cannot install various functions in R
GRanges
packages
installation
updated 2.0 years ago by
shepherl
3.9k • written 2.0 years ago by
Eli
• 0
0
votes
2
replies
583
views
Bioconductor API or dataset
Bioconductor
Packages
Dataset
API
updated 15 months ago by
Marcel Ramos
690 • written 15 months ago by
dab0012
• 0
0
votes
1
reply
1.1k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 4.6 years ago by
Mike Smith
★ 6.5k • written 4.6 years ago by
kodherif
• 0
5
votes
1
reply
439
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 6 months ago by
shepherl
3.9k
1
vote
1
reply
987
views
News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
6.0 years ago
shepherl
3.9k
0
votes
1
reply
1.0k
views
News:
Single Package Builder Updates and Testing
packages
review
spb
News
6.4 years ago
shepherl
3.9k
1
vote
1
reply
855
views
Error when installing edgeR and DESeq package
software error
packages
updated 3.9 years ago by
James W. MacDonald
65k • written 3.9 years ago by
yassiflower
• 0
2
votes
1
reply
2.7k
views
Installation of bioConductor packages
installation
packages
bioconductor
all
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
av
• 0
0
votes
1
reply
660
views
Notification for package release?
packages
updated 2.9 years ago by
Lluís Revilla Sancho
▴ 730 • written 2.9 years ago by
curiousmind007
▴ 10
0
votes
1
reply
1.2k
views
trouble installing DESeq2
install
packages
R
DESeq2
updated 24 months ago by
shepherl
3.9k • written 24 months ago by
eruan1
• 0
0
votes
1
reply
1.9k
views
Installation of r2excel package
github
packages
updated 5.3 years ago by
Gordon Smyth
50k • written 5.3 years ago by
thkapell
▴ 10
0
votes
1
reply
1.7k
views
R: oligo packages install error
oligo
packages
error
updated 4.8 years ago by
Martin Morgan
25k • written 4.8 years ago by
get3232
• 0
0
votes
1
reply
4.6k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
4.7 years ago
444579004
• 0
2
votes
1
reply
993
views
Large Size of R packages containing S4 classes
S4
packages
updated 5.7 years ago by
Michael Lawrence
★ 11k • written 5.7 years ago by
lukaszbednarz
▴ 10
4
votes
0
replies
945
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
3.5 years ago
shepherl
3.9k
3
votes
0
replies
66
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
4 days ago
shepherl
3.9k
4
votes
0
replies
657
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
20 months ago
shepherl
3.9k
1
vote
0
replies
851
views
News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
2.6 years ago
shepherl
3.9k
0
votes
0
replies
1.6k
views
what R package prediction secondary structure for amino acids
packages
9.0 years ago
m016648
• 0
0
votes
0
replies
807
views
News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
Packages
BuildReport
devel
2.8 years ago
shepherl
3.9k
6
votes
0
replies
857
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
4.5 years ago
shepherl
3.9k
0
votes
0
replies
597
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
12 months ago
shepherl
3.9k
1
vote
0
replies
793
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
18 months ago
shepherl
3.9k
1
vote
0
replies
778
views
News:
Bioconductor Release 3.11 Schedule Posted
release
deadlines
builds
packages
News
4.2 years ago
shepherl
3.9k
8
votes
0
replies
894
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
2.5 years ago
shepherl
3.9k
4
votes
0
replies
816
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
4.0 years ago
shepherl
3.9k
1
vote
0
replies
829
views
News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
2.2 years ago
shepherl
3.9k
5
votes
0
replies
1.0k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
3.0 years ago • updated 2.9 years ago
shepherl
3.9k
0
votes
0
replies
1.5k
views
News:
New Package Submission Deadline
Packages
News
8.2 years ago
Martin Morgan
25k
50 results • Page
1 of 1
Recent ...
Replies
Comment: Why does GSEA on edgeR results for randomized samples give highly significant p-
by
Chris
• 0
Thanks Gordon for the advice! I ran fgsea, gsva and camera(), the most significant pathways are different. For the purpose of finding pathw…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
41k
Check the number of bootstrapped data per chromosome compared to the original, and then you can also look at its distribution. For this it'…
Comment: DNAString: Standard checksum function?
by
Henrik Bengtsson
★ 2.4k
For completeness: SEGUID v2 (https://www.seguid.org/), implemented in CRAN package **[seguid](https://cran.r-project.org/package=seguid)*…
Comment: fgsea significant result
by
Chris
• 0
Thanks ATpoint! Setting a fixed seed can reproduce the same result. However, if someone else analyze the same data with different seed, the…
Comment: SGSeq: moving toward diffex from SGSeq analysis
by
Sara
• 0
Thank you for your response. I have another question about saving the sgvc result as a CSV file. I would appreciate your help, please. ``` …
Votes
Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
Handling multiple differential expression comparisons
Answer: fgsea significant result
Answer: fgsea significant result
package goseq seems to be not available on the latest version of R
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