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News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
17 months ago
shepherl
4.2k
5
votes
1
reply
1.8k
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News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 24 months ago by
shepherl
4.2k
0
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0
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1.2k
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News:
Bioconductor 3.17 is Released!
Packages
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Software
2.5 years ago
shepherl
4.2k
0
votes
2
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976
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Bioconductor API or dataset
Bioconductor
Packages
Dataset
API
updated 2.7 years ago by
Marcel Ramos
700 • written 2.7 years ago by
dab0012
• 0
1
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0
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1.3k
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News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
3.0 years ago
shepherl
4.2k
4
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0
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1.2k
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News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
3.1 years ago
shepherl
4.2k
0
votes
1
reply
1.7k
views
trouble installing DESeq2
install
packages
R
DESeq2
updated 3.4 years ago by
shepherl
4.2k • written 3.4 years ago by
eruan1
• 0
0
votes
2
replies
1.8k
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cannot install various functions in R
GRanges
packages
installation
updated 3.5 years ago by
shepherl
4.2k • written 3.5 years ago by
Eli
• 0
8
votes
0
replies
1.3k
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News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
3.5 years ago
shepherl
4.2k
1
vote
6
replies
4.9k
views
Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 3.6 years ago by
Marcel Ramos
700 • written 3.6 years ago by
jose
▴ 10
1
vote
0
replies
1.3k
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News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
3.6 years ago
shepherl
4.2k
8
votes
0
replies
1.4k
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News:
Bioconductor 3.14 is Released!
release
Packages
Software
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Bioconductor
4.0 years ago
shepherl
4.2k
1
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0
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1.4k
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News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
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Release
4.1 years ago
shepherl
4.2k
0
votes
0
replies
1.2k
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News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
Packages
BuildReport
devel
4.2 years ago
shepherl
4.2k
0
votes
1
reply
1000
views
Notification for package release?
packages
updated 4.4 years ago by
Lluís Revilla Sancho
▴ 760 • written 4.4 years ago by
curiousmind007
▴ 10
5
votes
0
replies
1.4k
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News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
4.4 years ago
shepherl
4.2k
4
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0
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1.3k
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News:
Bioconductor 3.12 is Released!
Software
release
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Packages
Release
5.0 years ago
shepherl
4.2k
0
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0
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1.5k
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News:
Bioconductor Release 3.12 Schedule Posted
packages
release
deadlines
builds
News
5.1 years ago
shepherl
4.2k
3
votes
3
replies
1.9k
views
Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 5.2 years ago by
Laurent Gatto
1.6k • written 5.5 years ago by
sreedta8
▴ 10
0
votes
3
replies
2.0k
views
Cant update old packages
software error
packages
update
updated 5.3 years ago by
James W. MacDonald
68k • written 5.3 years ago by
bs14ab
• 0
0
votes
4
replies
2.9k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install
packages
Mus.musculus
updated 5.3 years ago by
Kevin Blighe
★ 4.0k • written 5.3 years ago by
443606623
• 0
1
vote
1
reply
1.2k
views
Error when installing edgeR and DESeq package
software error
packages
updated 5.4 years ago by
James W. MacDonald
68k • written 5.4 years ago by
yassiflower
• 0
1
vote
5
replies
3.9k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 5.4 years ago by
Kevin Blighe
★ 4.0k • written 5.4 years ago by
bs14ab
• 0
4
votes
0
replies
1.2k
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
5.5 years ago
shepherl
4.2k
3
votes
4
replies
2.2k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
5.5 years ago
dakarai_esgdaille
▴ 10
1
vote
0
replies
1.1k
views
News:
Bioconductor Release 3.11 Schedule Posted
release
deadlines
builds
packages
News
5.6 years ago
shepherl
4.2k
0
votes
2
replies
1.7k
views
Unable to install package
packages
installation
GenomeGraphs
updated 5.7 years ago by
James W. MacDonald
68k • written 5.7 years ago by
alex
• 0
2
votes
2
replies
1.4k
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News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
6.0 years ago
shepherl
4.2k
6
votes
0
replies
1.3k
views
News:
Bioconductor 3.10 is released!!
release
software
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bioconductor
News
6.0 years ago
shepherl
4.2k
0
votes
1
reply
1.4k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 6.1 years ago by
Mike Smith
★ 6.6k • written 6.1 years ago by
kodherif
• 0
1
vote
4
replies
2.4k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
6.1 years ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
6.3k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
6.1 years ago
444579004
• 0
0
votes
1
reply
2.7k
views
R: oligo packages install error
oligo
packages
error
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
get3232
• 0
0
votes
1
reply
2.4k
views
Installation of r2excel package
github
packages
updated 6.8 years ago by
Gordon Smyth
53k • written 6.8 years ago by
thkapell
▴ 10
2
votes
1
reply
1.4k
views
Large Size of R packages containing S4 classes
S4
packages
updated 7.2 years ago by
Michael Lawrence
★ 11k • written 7.2 years ago by
lukaszbednarz
▴ 10
1
vote
1
reply
1.3k
views
News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
7.5 years ago
shepherl
4.2k
0
votes
2
replies
2.6k
views
Issues installing packages miniconda environment
bioclite
deseq2
miniconda
packages
7.6 years ago
cpat
• 0
2
votes
2
replies
1.7k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment
packages
granges
iranges
updated 7.8 years ago by
Aaron Lun
★ 29k • written 7.8 years ago by
rbronste
▴ 60
1
vote
2
replies
3.0k
views
Error : object path is not exported by namespace:Rsamtools
packages
installation problem
rsamtools
chippeakanno
ensembldb
7.8 years ago
inzirio
▴ 10
0
votes
1
reply
1.4k
views
News:
Single Package Builder Updates and Testing
packages
review
spb
News
7.9 years ago
shepherl
4.2k
0
votes
2
replies
1.7k
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
7.9 years ago
shepherl
4.2k
12
votes
5
replies
2.5k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
8.0 years ago
shepherl
4.2k
3
votes
3
replies
1.9k
views
Question regarding best bioconductor package for RNA-seq
rna-seq
packages
updated 8.6 years ago by
b.nota
▴ 370 • written 8.6 years ago by
Maximilian
▴ 10
3
votes
6
replies
2.8k
views
List of package names with versions
packages
updated 9.6 years ago by
Sushant Pawar
• 0 • written 9.6 years ago by
nathan.watsonhaigh
• 0
0
votes
0
replies
1.7k
views
News:
New Package Submission Deadline
Packages
News
9.7 years ago
Martin Morgan
25k
0
votes
4
replies
2.0k
views
Newbee question: how to output/write data (measureents) to a text file?
packages
9.8 years ago
Reinert Korsnes
• 0
2
votes
1
reply
3.5k
views
Installation of bioConductor packages
installation
packages
bioconductor
all
updated 9.9 years ago by
Martin Morgan
25k • written 9.9 years ago by
av
• 0
2
votes
4
replies
3.0k
views
Package RnBeads not available for R 3.1.2?
RnBeads
packages
R 3.1.2
10.3 years ago
bmreilly
• 0
1
vote
11
replies
2.8k
views
Bioconductor Software Packages raw (not html) detail view?
packages
details
10.7 years ago • updated 10.3 years ago
smoretti
▴ 10
0
votes
0
replies
1.9k
views
what R package prediction secondary structure for amino acids
packages
10.5 years ago
m016648
• 0
52 results • Page
1 of 2
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Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Oh. ``` > z <- read10xCounts(c(tmpdir, tmpdir), mtx.class = "SVT_SparseMatrix", delayed = TRUE) > class(counts(z)) [1] "DelayedMatrix" att…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
That's weird. Using the example data works for me. ``` > example(read10xCounts) rd10xC> # Mocking up some 10X genomics output. rd10xC> ex…
Comment: Join BOC Sciences at Drug Discovery Chemistry
by
teamardigen
• 0
Sounds like an exciting event for anyone passionate about small molecule innovation. The focus on discovery and optimization really drives …
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
dan.gatti
• 0
I am, but perhaps I'm not understanding how it should work. > sse = DropletUtils::read10xCounts(curr_files[1], mtx.class = 'SVT_Sparse…
Comment: Best practice for handling large data (matrix with >2^31-1 non-zero elements) in
by
James W. MacDonald
68k
Did you use the development version as Aaron suggested? There is an argument to read the market matrix file directly into an `SVT_SparseMat…
Votes
Join BOC Sciences at Drug Discovery Chemistry
Drug datasets for RNA-seq
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
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