Showing : Proteomics • reset
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Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
4.7 years ago Robert Castelo ★ 3.4k
2
votes
1
reply
5.1k
views
Convert UniProt Entry Names into Gene Symbols
Proteomics ProteomicsWorkflow UniProt.ws
updated 4.8 years ago by 68k • written 4.8 years ago by ★ 1.6k
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1.5k
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Job: Proteomics Bioinformatician
JobPosting Proteomics Statistics Job
4.9 years ago Laura • 0
1
vote
2
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1.8k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
4.9 years ago Oliver • 0
0
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3
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1.7k
views
Why I can not install rTANDEM?
MassSpectrometry Proteomics mzR
4.9 years ago Gilad • 0
1
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2
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1.6k
views
error in installation of 'org.Hs.eg.db'
proteomics GenomicSequence
updated 4.9 years ago by ▴ 100 • written 4.9 years ago by • 0
5
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6
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2.0k
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possible package naming conflict
proteomics
4.9 years ago Tobias ▴ 40
1
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0
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2.0k
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News: Online training - Proteomics in R and Bioconductor
ProteomicsWorkflow proteomics Proteome
4.9 years ago info ▴ 10
0
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1
reply
1.5k
views
R package to change protein *.msf file to any readable file
Proteome ProteomicsWorkflow proteomics
updated 5.0 years ago by ★ 1.4k • written 5.0 years ago by ▴ 20
0
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0
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1.4k
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Job: Data Scientist Proteomics (100%), Biozentrum, University of Basel, Switzerland
Switzerland JobPosting Basel Proteomics
5.0 years ago Robert Ivanek ▴ 750
0
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3
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2.1k
views
Find DEPs among TMT labeling proteom time course data by limma
limma proteomics TMTlabeling timecoursedata
updated 5.0 years ago by ▴ 360 • written 5.0 years ago by • 0
3
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1
reply
3.5k
views
Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
written 5.1 years ago by ★ 2.1k
2
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0
replies
1.3k
views
Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
5.1 years ago Johannes Rainer ★ 2.1k
1
vote
6
replies
4.1k
views
DEP package: Problems installing on macOS
software error DEP proteomics
updated 5.3 years ago by 1.6k • written 5.3 years ago by • 0
0
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0
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1.6k
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Job: Research software engineer at the de Duve Institute, UCLouvain (Brussels, Belgium)
software engineer RNASeq proteomics Job visualisation
5.4 years ago Laurent Gatto 1.6k
0
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0
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808
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How to generate custom MS database using CustomProDB?
r proteomics
5.5 years ago nattzy94 ▴ 20
2
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1
reply
1.4k
views
Maximum parsimony protein assembly/inference
rforproteomics proteomics msnid msnbase
5.6 years ago daniel.magnus.bader ▴ 50
2
votes
1
reply
2.2k
views
Multiple protein ids issue- which protein IDs should be selected for downstream analysis?
Proteomics enrichment Perseus
5.7 years ago harelarik ▴ 60
1
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0
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1.4k
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News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
5.8 years ago Laurent Gatto 1.6k
1
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2
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2.5k
views
Proteomics: package/statistics to compare very different LFQ-proteomes
dep proteomics limma
5.8 years ago Rob • 0
0
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0
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1.4k
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Job: Bioinformatician Positions at the University of Chicago BSD Bioinformatics Core
RNA-seq DNA-seq ATAC-seq proteomics microbiome Job
5.9 years ago lhuang7 ▴ 50
3
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0
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3.1k
views
Job: Postdoctoral Scientist, Statistical Bioinformatics and Proteomics, WEHI Australia
job proteomics Job statistics
6.0 years ago • updated 5.9 years ago Gordon Smyth 53k
0
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0
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1.7k
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News: May Institute Computation and statistics for mass spectrometry and proteomics
conference mass spectrometry proteomics News
5.9 years ago shepherl 4.2k
0
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0
replies
1.2k
views
News: course - Protemics with R and Bioconductor - 17-19 February 2020 in Berlin
Bioconductor R Proteomics News
6.0 years ago info ▴ 10
0
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0
replies
684
views
proteoQC throwing error after running
ProteoQC Proteomics
6.0 years ago laural710 • 0
0
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2
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1.8k
views
Total Area Sum Intensity based Normalization for label-free quantitative proteomics
normalization proteomics label-free
6.0 years ago amolares • 0
0
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3
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2.2k
views
Writing a loop through multiple fasta files and named files (is it possible with MSGFplus?)
MSGF+ Proteomics r
updated 6.1 years ago by 25k • written 6.1 years ago by • 0
0
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0
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1.2k
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DEP package - Understanding the results table
dep proteomics logFC
6.1 years ago rina ▴ 30
0
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0
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1.4k
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DEP: TMT analysis from MaxQuant output
DEP TMT proteomics
6.1 years ago dparrine • 0
2
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0
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2.8k
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Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
6.1 years ago Laurent Gatto 1.6k
0
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0
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927
views
News: Protemics with R and Bioconductor course in Berlin
R Proteomics News
6.2 years ago info ▴ 10
0
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0
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1.4k
views
Proteomics data analysis with DEP no replicates
DEP Proteomics Statistics limma
6.2 years ago tatabox • 0
0
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8
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4.5k
views
Getting data into (and out of) the MSnSet object
proteomics MSnbase MSnSet readMSnSet msmsTests
updated 6.2 years ago by • 0 • written 7.8 years ago by ▴ 20
3
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3
replies
1.7k
views
Clarification of results tables in DEP
DEP proteomics
updated 6.3 years ago by ▴ 70 • written 6.3 years ago by ▴ 510
1
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3
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1.4k
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Interpreting Fold Change Calculation in Limma to Non-Statisticians: Sanity Check
Limma proteomics limma
updated 6.5 years ago by • 0 • written 6.5 years ago by • 0
2
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2
replies
1.3k
views
Where can I get functional bins for Arabidopsis thaliana genome (AGIs)
r proteomics RNA-Seq
updated 6.6 years ago by ▴ 180 • written 6.6 years ago by ▴ 10
0
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0
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1.2k
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
6.6 years ago Wuschel ▴ 10
0
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2
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1.3k
views
Comparative proteome analysis of two different species
proteomics LC-MS/MS
updated 6.6 years ago by 1.6k • written 6.6 years ago by • 0
1
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0
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2.0k
views
Job: Full time and permanent research logistician in Bioinformatics
transcriptomics proteomics job bioinformatician Job
6.7 years ago • updated 6.6 years ago Laurent Gatto 1.6k
1
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2
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1.1k
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Errors installing "shinyTANDEM" package
software error proteomics
updated 6.7 years ago by 1.6k • written 6.7 years ago by • 0
1
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2
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2.9k
views
Errors installing mzR package
proteomics error
updated 6.7 years ago by 1.6k • written 6.7 years ago by • 0
1
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1
reply
1.8k
views
News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
written 6.7 years ago by 1.6k
4
votes
5
replies
2.8k
views
How to convert a xlsx data file to MSnSet format?
msnbase msmstests proteomics lc-ms/ms msnID
updated 6.7 years ago by 1.6k • written 6.7 years ago by ▴ 10
0
votes
3
replies
1.3k
views
What does component or SCX classification in iTRAQ/TMT experiment represent?
proteomics
updated 7.0 years ago by 1.6k • written 7.0 years ago by • 0
1
vote
1
reply
1.5k
views
Define batch effect variables before removing them or getting rid of hidden surrogate variables
batch effect correction sva proteomics
7.0 years ago Sebastian Hesse ▴ 70
2
votes
12
replies
2.5k
views
msmsTests, NA values in test.results output
Proteomics msmstests FDR
updated 7.1 years ago by 1.6k • written 7.1 years ago by • 0
3
votes
4
replies
1.9k
views
Writing a loop to clean up protein names
Proteomics Transcriptomics Loops batch-processing R
updated 7.1 years ago by ▴ 80 • written 7.1 years ago by • 0
1
vote
2
replies
4.0k
views
Limma: technical and biological replicates in proteomics data
limma proteomics replicates
updated 7.3 years ago by ★ 29k • written 7.3 years ago by • 0
0
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0
replies
1.0k
views
Extracting p-value table in Prostar
prostar proteomics
7.4 years ago laural710 • 0
1
vote
3
replies
1.8k
views
Running GO analysis via Prostar
prostar proteomics rforproteomics annotationforge
updated 7.4 years ago by ▴ 10 • written 7.5 years ago by ▴ 20
235 results • Page 2 of 5
Recent ...
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Answer: Add additional maintainer for MOFA2 by shepherl 4.2k
These requests are best on the bioc-devel @ r-project.org or a request to maintainer @ bioconductor.org -- We would ideally need the curre…
Answer: After running samtools, the featureCounts command crashed. by Kevin Blighe ★ 4.0k
Hi Rui Tang, The "buffer overflow detected" error in featureCounts usually stems from a corrupted or malformed GTF file, often due to tr…
Answer: Problem with the TMB plot by Kevin Blighe ★ 4.0k
Hi, The linear TMB plot with no clustering suggests your variant calls may lack sample-specific discrimination, likely due to filtering ap…
Answer: gene Set with high AUC score but no cells assigned to cell type by Kevin Blighe ★ 4.0k
Hi, You have correctly identified the issue: AUCell's automatic threshold selection is conservative by design, aiming for specificity to…
Answer: featureCounts -L: high unassigned:mapq fraction by Kevin Blighe ★ 4.0k
Hi Katarzyna, The discrepancy arises because your samtools stats were restricted to genic regions only, where alignments are typically o…
Votes
Answer: DESeq2 design for haplotype MPRA
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Failure to download resources (MeSHDb) from AnnotationHub
Answer: Suppress warning in RHDF5 write
Answer: Suppress warning in RHDF5 write
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Scholar to shepherl 4.2k
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